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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G221000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 481aa MW: 53364.4 Da PI: 4.9548 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.2 | 1.6e-08 | 16 | 61 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + k++++fC ++ +lC+ C + H+ H++v+l Prupe.5G221000.1.p 16 ARACDSCLIKRARWFCAADDAFLCQRCDGSVHSAnqlasrHERVKL 61 678*****************************66889999998875 PP | |||||||
2 | CCT | 68 | 2.6e-23 | 410 | 453 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Prupe.5G221000.1.p 410 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 453 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.495 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-7 | 16 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.53E-8 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 410 | 452 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.7E-18 | 410 | 452 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MITEKKAANA VGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK 60 LQAASSKSNQ STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VSLNPPLPFV 120 PEIGCEEANY MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AINLDDEVTE 180 MGRGNHHEVG DDDEENNNNN YGGNELDNLP GFLPSDMELA EFAADVENLI GGGLDDEDSG 240 DIKGVLGLLD DSKLEGNGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL 300 RLSSSPLPMG GEEEKVVFLM GARSSDEVAL MDNKQMMMKR KICLRLDYEA IITAWANQGS 360 PWTTGTRPEL NPDDGWLDCM GMRGSDQIHQ PHGHGESARC VGGRGDDRGR EARVSRYREK 420 RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRTSSSNFVG SSSSNSSKTA AAAFPYLIHQ 480 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 420 | 436 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G221000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420270.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A251PC57 | 0.0 | A0A251PC57_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240273.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 1e-76 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G221000.1.p |