PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G221000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 481aa    MW: 53364.4 Da    PI: 4.9548
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G221000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-081661342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        +r C+ +  k++++fC  ++ +lC+ C  + H+       H++v+l
  Prupe.5G221000.1.p 16 ARACDSCLIKRARWFCAADDAFLCQRCDGSVHSAnqlasrHERVKL 61
                        678*****************************66889999998875 PP
2CCT682.6e-23410453144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Prupe.5G221000.1.p 410 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 453
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4951461IPR000315B-box-type zinc finger
SMARTSM003362.5E-101461IPR000315B-box-type zinc finger
PfamPF006433.7E-71661IPR000315B-box-type zinc finger
CDDcd000214.53E-81761No hitNo description
PROSITE profilePS5101716.083410452IPR010402CCT domain
PfamPF062036.7E-18410452IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MITEKKAANA VGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK  60
LQAASSKSNQ STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VSLNPPLPFV  120
PEIGCEEANY MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AINLDDEVTE  180
MGRGNHHEVG DDDEENNNNN YGGNELDNLP GFLPSDMELA EFAADVENLI GGGLDDEDSG  240
DIKGVLGLLD DSKLEGNGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL  300
RLSSSPLPMG GEEEKVVFLM GARSSDEVAL MDNKQMMMKR KICLRLDYEA IITAWANQGS  360
PWTTGTRPEL NPDDGWLDCM GMRGSDQIHQ PHGHGESARC VGGRGDDRGR EARVSRYREK  420
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRTSSSNFVG SSSSNSSKTA AAAFPYLIHQ  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420436RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G221000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420270.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A251PC570.0A0A251PC57_PRUPE; Uncharacterized protein
STRINGXP_008240273.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-76B-box type zinc finger protein with CCT domain