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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G187100.1.p | ||||||||
Common Name | PRUPE_ppa007577mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40353.3 Da PI: 8.2285 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.3e-53 | 26 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkkv++ +l++ +i+e+++yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Prupe.4G187100.1.p 26 LPPGFRFHPTDEELVVHYLKKKVTSAPLPV-AIIAEIELYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 115 79****************************.88***************988899************************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Prupe.4G187100.1.p 116 VLTSgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 153 **9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-64 | 21 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.709 | 26 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 27 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MESTDSSTAS QQQQQQQPQP PPQPNLPPGF RFHPTDEELV VHYLKKKVTS APLPVAIIAE 60 IELYKFDPWE LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTSG 120 GTQKVGVKKA LVFYGGKPPK GIKTNWIMHE YRLADSKTSN KPPGCDLGNK KNSLRLDDWV 180 LCRIYKKNNS HRPMDLERED SMEDMMGPLM PPSISHVGHH QNMNLHLPKS NTNYGPPFIE 240 NDQIIFDGIM SSTDGSASLS NGTSQLPLKR SIVPSLYWND QEDDQTAGAS SSKRVVQLHQ 300 LDSGTNNSVA ANNNSTSIAN LLSQLPQTPP LHQHAMLGSL GDGLFRTPYQ LPGMNWFSES 360 NLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-75 | 16 | 190 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-75 | 16 | 190 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-75 | 16 | 190 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-75 | 16 | 190 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-75 | 16 | 190 | 7 | 168 | NAC domain-containing protein 19 |
4dul_B | 9e-75 | 16 | 190 | 7 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.795 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. | |||||
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G187100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR822708 | 0.0 | KR822708.1 Prunus persica NAC transcription factor NAC1 (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211475.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-122 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | M5WG30 | 0.0 | M5WG30_PRUPE; NAC transcription factor NAC1 | ||||
STRING | EMJ12674 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-122 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G187100.1.p |
Entrez Gene | 18779686 |
Publications ? help Back to Top | |||
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