PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G017600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 588aa MW: 63971.7 Da PI: 7.9509 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 326 | 384 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Prupe.4G017600.2.p 326 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 384 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 310 | 386 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 318 | 386 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 320 | 386 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 325 | 385 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-26 | 327 | 384 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MDKGWGLTLD SESFGFFLNK PPAAVKLDHH QNNSKRSNFF GGERMFPGIE FPVKLGGRED 60 QLAAPQPSIH DNNNRVVVDE VDFFSDRKNK HNTTTTDDDH QDMKSNGTIS VKKENWTGLD 120 VNLAQLQVEL QRMNSENLRL KEMLGQVTNN YSALQMHVAA VMQQQQQQQQ NHTAAADQSS 180 QLNHDQNVEA KSDQEKKQGL VPRQFLNLGP RATAETDDQV SNSSSEARTR SASPQNINEA 240 ASSKDHHLKK NDHPIGPLDP ENSNNFRDGK RVGREESPES ESQGWVPNKA PKLNSATNKP 300 IDQSTEATMR KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR 360 KQVQRCAEDR TILITTYEGN HNHPLPPAAM AMASTTTAAA SMLLSGSMSS ADGIMNPNNL 420 LARAILPCSS SVATISASAP FPTVTLDLTT TPLQFQRPQS QFQVPFPGQQ PQLPQVFGQA 480 LYNQSKFSGL QLSQDLMGSN SQQQQQHLPH QTQSASFADT VSAATAAITA DPTFTAALAA 540 AITSIIGGGH PNNNNNNNNN SASTTSNNSN GGNNNNSNSK MSGFPGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 312 | 388 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.3473 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G017600.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX112905 | 0.0 | JX112905.1 Malus hupehensis WRKY transcription factor 42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417574.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-147 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A251PEA8 | 0.0 | A0A251PEA8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224752.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-101 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G017600.2.p |