PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G308200.1.p

Common Name

PRUPE_ppa016459mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 224aa MW: 25418.3 Da PI: 9.3289

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G308200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.2	7.2e-33	144	202	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+ Prupe.3G308200.1.p 144 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGIVVTTYEGMHTHP 202 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-34	129	202	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-30	136	203	IPR003657	WRKY domain
PROSITE profile	PS50811	29.872	139	204	IPR003657	WRKY domain
SMART	SM00774	2.7E-39	144	203	IPR003657	WRKY domain
Pfam	PF03106	9.9E-27	145	202	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEKYQMFFPC SSSTSSANYD PMIPISATNN ITTDGHHMGM GSSQVYNYFD GRDQSSNGLL 60 GLRSSAGNHV GREVLINKDH HQYLQQQYSD LTTTASANIN INNVIVGADQ NPHEATNSGN 120 KNKGEKKTRK PKYAFQTRSQ VDILDDGYRW RKYGQKAVKN NKFPRSYYRC TYQGCNVKKQ 180 VQRLTKDEGI VVTTYEGMHT HPIEKPSDNF EHILNQMQIY TPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-27	134	203	7	76	Probable WRKY transcription factor 4
2lex_A	6e-27	134	203	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G308200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007216937.1	1e-169	probable WRKY transcription factor 45
TrEMBL	M5WY44	1e-168	M5WY44_PRUPE; Uncharacterized protein
STRING	EMJ18136	1e-169	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-57	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Prupe.3G308200.1.p
Entrez Gene	18784367