PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G531500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 73aa MW: 8289.94 Da PI: 10.9866 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.6 | 2.2e-25 | 19 | 62 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl++yss Prupe.1G531500.1.p 19 ARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDYSS 62 79****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.773 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-25 | 4 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-32 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-23 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-22 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-23 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-23 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MVKMMREKIK IKKIDYLPAR QVTFSKRRRG IFKKAAELSV LCESEVAVVI FSATGKLFDY 60 SSSSFLTRNK VI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 4 | 64 | 1 | 61 | MEF2C |
5f28_B | 4e-16 | 4 | 64 | 1 | 61 | MEF2C |
5f28_C | 4e-16 | 4 | 64 | 1 | 61 | MEF2C |
5f28_D | 4e-16 | 4 | 64 | 1 | 61 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.19900 | 1e-106 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G531500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ863250 | 1e-103 | DQ863250.1 Prunus persica dam4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008219272.1 | 4e-38 | PREDICTED: MADS-box protein AGL24-like isoform X1 | ||||
Swissprot | Q9FUY6 | 4e-27 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A251RH48 | 2e-43 | A0A251RH48_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25143 | 9e-38 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 9e-24 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G531500.1.p |
Publications ? help Back to Top | |||
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