PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G427500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 315aa    MW: 35759.5 Da    PI: 5.149
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G427500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.9e-28958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        k ien++nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  Prupe.1G427500.1.p  9 KMIENTTNRQVTYSKRRNGLMKKAYELSVLCDVDVALIMFSPSGRLSLFS 58
                        68*******************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.016161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-30278IPR002100Transcription factor, MADS-box
CDDcd002651.08E-35275No hitNo description
PRINTSPR004046.5E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251155IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRVKLQIKM IENTTNRQVT YSKRRNGLMK KAYELSVLCD VDVALIMFSP SGRLSLFSGN  60
KSIEEILARY VNLPGHERGG RVKIVNTSVI FEDKIRGNIK ESRNIYKHKR YIDNFPCHFD  120
GCSPISTDSD QLEEIQQEIL CCKSQVKEVE NQLRIFEGDL SEVTTLNEAE YREQILEETL  180
KRMHVRKQIL EEYDSSPTAT TNVDEFVTAS PHNILVDWLP QRDPQVVQIL NFLNANGLLP  240
LRGEAKSRLE VIAAPESSTL LHGINLEDQM NPGRGSGLDD ENNNTTLQRP ELGQVIDVNL  300
SPWNEFYQTS TCFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16171170MEF2 CHIMERA
6byy_B2e-16171170MEF2 CHIMERA
6byy_C2e-16171170MEF2 CHIMERA
6byy_D2e-16171170MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G427500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413055.10.0agamous-like MADS-box protein AGL104
TrEMBLA0A251RC110.0A0A251RC11_PRUPE; Uncharacterized protein
STRINGXP_008220358.11e-142(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-45AGAMOUS-like 104