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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G305300.2.p | ||||||||
Common Name | PRUPE_ppa005648mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 50929.5 Da PI: 4.7253 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.6 | 2.6e-32 | 58 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+e+++ +L +k +++ ++++ + +++ +i+ ++P++Lp +vk++ + +fF+++ k+y+tg+rk+r+++ Prupe.1G305300.2.p 58 LPKGVKFDPTDQEIIW-HLIAKSGAEDlkshpfIDEFIItVDDDeGICCSHPHKLP-SVKQDGSASHFFHRAIKAYNTGTRKRRKIHdgdg 146 799************5.56666655553565443333332443336**********.778888999******************9883433 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y + k++kt+Wvmh+y+l Prupe.1G305300.2.p 147 DVRWHKTGRTKPVML-DGVQRGCKKIMVLYmsTVGGGKPKKTNWVMHQYHL 196 446************.99************5533555667*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-38 | 43 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.255 | 58 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-14 | 59 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MAGPSWLVDK NRIATKIKSA SGTCDPERIK WQSNPTRACP NCQYTIDNSD VAQEWPGLPK 60 GVKFDPTDQE IIWHLIAKSG AEDLKSHPFI DEFIITVDDD EGICCSHPHK LPSVKQDGSA 120 SHFFHRAIKA YNTGTRKRRK IHDGDGDVRW HKTGRTKPVM LDGVQRGCKK IMVLYMSTVG 180 GGKPKKTNWV MHQYHLGTEE DEKDGEYVIS KIYYQQQQVK QADKTDQDIP EGFDLVITEV 240 DPVTPKSVTP EPPRTERKLA DFDLGQDTPA TSRDPFPQHH AEDEVHPKMD HAEDEVHPEM 300 DHAEDEVHPE IEKPDHYDQH NVENEADEVI NNTENNAQED PKWWDSESQN LLDSQQLVEG 360 LSLCDDLLQS QSPIRTGHEN GEPARVKPRL ADYAKLGPEN LKKDLEECQN IVLDPANIML 420 EDTPPDFRLS QLEFGSQESF LSWGVKLAD* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G305300.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222098.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Refseq | XP_020411132.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-179 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M5XB16 | 0.0 | M5XB16_PRUPE; Uncharacterized protein | ||||
STRING | EMJ23297 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-172 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G305300.2.p |
Entrez Gene | 18791726 |