PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_13640V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

WOX

Protein Properties

Length: 290aa MW: 31284.9 Da PI: 6.5236

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_13640V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.4e-20	121	181	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lFe+ + +p++ +++e++++l ++e++V++WFqNr+a+ k+ Pp3c9_13640V3.2.p 121 RQRWTPSQHQLQILEKLFEQgSGTPNKVRIKEITAELsqhgAISETNVYNWFQNRKARAKR 181 89***************99************************************97 PP
2	Wus_type_Homeobox	98.7	4.4e-32	120	183	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tPnk +i++itaeL+++G+i+++NV++WFQNrkaR ++kq Pp3c9_13640V3.2.p 120 ARQRWTPSQHQLQILEKLFEQGSGTPNKVRIKEITAELSQHGAISETNVYNWFQNRKARAKRKQ 183 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-17	112	184	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-15	115	185	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.479	117	182	IPR001356	Homeobox domain
SMART	SM00389	6.8E-13	119	186	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-18	121	181	IPR001356	Homeobox domain
CDD	cd00086	6.19E-13	121	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MQSNGMEPES RLGRMMDMSP IGSGLRGQPV SGGAMLGVGP SLENPLPQPM YTRGSGQVMT 60 EEQLETLRRQ ISVYATICQQ LVEMHKASVS QQASLPGILA GGQIVSMDQM TGTPTHKSTA 120 RQRWTPSQHQ LQILEKLFEQ GSGTPNKVRI KEITAELSQH GAISETNVYN WFQNRKARAK 180 RKQQLVTPKD GESEADSDGE SPKEKRTRQK GDQNQDESVG IGDPHGGGSF DGAGNGVPEQ 240 KAVNSDQQDA TSSALLHPQA DTKPDISSFN RGAGFDPYNM PQGIPPMMS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3138	0.0	gametophore\| protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB699868	1e-163	AB699868.1 Physcomitrella patens PpWOX13B gene for WUSCHEL-related homeobox protein 13B, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385206.1	0.0	WUSCHEL-related homeobox 8-like
Refseq	XP_024385208.1	0.0	WUSCHEL-related homeobox 8-like
Refseq	XP_024385209.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-51	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2K1K341	0.0	A0A2K1K341_PHYPA; Uncharacterized protein
STRING	PP1S224_106V6.1	1e-180	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-50	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Pp3c9_13640V3.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]