PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_13640V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WOX | ||||||||
Protein Properties | Length: 290aa MW: 31285.9 Da PI: 6.2574 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.4e-20 | 121 | 181 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lFe+ + +p++ +++e++++l ++e++V++WFqNr+a+ k+ Pp3c9_13640V3.1.p 121 RQRWTPSQHQLQILEKLFEQgSGTPNKVRIKEITAELsqhgAISETNVYNWFQNRKARAKR 181 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 98.7 | 4.4e-32 | 120 | 183 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tPnk +i++itaeL+++G+i+++NV++WFQNrkaR ++kq Pp3c9_13640V3.1.p 120 ARQRWTPSQHQLQILEKLFEQGSGTPNKVRIKEITAELSQHGAISETNVYNWFQNRKARAKRKQ 183 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-17 | 112 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 115 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.479 | 117 | 182 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-13 | 119 | 186 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.9E-18 | 121 | 181 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.04E-13 | 121 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MESNGMEPES RLGRMMDMSP IGSGLRGQPV SGGAMLGVGP SLENPLPQPM YTRGSGQVMT 60 EEQLETLRRQ ISVYATICQQ LVEMHKASVS QQASLPGILA GGQIVSMDQM TGTPTHKSTA 120 RQRWTPSQHQ LQILEKLFEQ GSGTPNKVRI KEITAELSQH GAISETNVYN WFQNRKARAK 180 RKQQLVTPKD GESEADSDGE SPKEKRTRQK GDQNQDESVG IGDPHGGGSF DGAGNGVPEQ 240 KAVNSDQQDA TSSALLHPQA DTKPDISSFN RGAGFDPYNM PQGIPPMMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3138 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB699868 | 1e-163 | AB699868.1 Physcomitrella patens PpWOX13B gene for WUSCHEL-related homeobox protein 13B, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385206.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Refseq | XP_024385208.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Refseq | XP_024385209.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-51 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2K1K341 | 0.0 | A0A2K1K341_PHYPA; Uncharacterized protein | ||||
STRING | PP1S224_106V6.1 | 1e-179 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-50 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_13640V3.1.p |
Publications ? help Back to Top | |||
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