PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 411aa MW: 46361.2 Da PI: 8.1577

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_6920V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+++fs++gkl y++ Pp3c8_6920V3.3.p 9 KKIENPTNRQVTYSKRRNGLMKKAYELSVLCDIDLALVMFSPSGKLTQYCN 59 68***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.777	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-31	2	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.62E-37	2	73	No hit	No description
PRINTS	PR00404	7.6E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	8.292	136	237	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLMK KAYELSVLCD IDLALVMFSP SGKLTQYCNC 60 SIEEVIGRFA NLSMHERNKS FEDMMTRFSN NQMHHDRSKY NKKVENLEHL HKALKKLAVE 120 QDLVASHQLL SVSKTTYELE QELKKSQLEK ELVQQQARLY LADEQLLRRV SSVQQLANME 180 TELEQALERV RARKNYVSSA YQTASVMQRR QHEFLGNSLQ MMALRQQQAQ QHQAGMAPTQ 240 PSFLHWTMQT ERSAPTPQDF MEQQTNPPTS LVPASLSREL GSEGEANLIP GYFSASQQHS 300 NLEGLRQVGM GVSRGLTMHD MSLEQPNAAH YIEEEKKGKV EASMGFVTSA SAAAVGTEGD 360 SETNLTRVQS EQAHGITNAS DWPPRPANHH PNALGNGNLF FSQNGHHAWK *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MGRVKLEIKK IENPTNRQVT YSKRRNGLMK KAYELSVLCD IDLALVMFSP SGKLTQYCNC  60
SIEEVIGRFA NLSMHERNKS FEDMMTRFSN NQMHHDRSKY NKKVENLEHL HKALKKLAVE  120
QDLVASHQLL SVSKTTYELE QELKKSQLEK ELVQQQARLY LADEQLLRRV SSVQQLANME  180
TELEQALERV RARKNYVSSA YQTASVMQRR QHEFLGNSLQ MMALRQQQAQ QHQAGMAPTQ  240
PSFLHWTMQT ERSAPTPQDF MEQQTNPPTS LVPASLSREL GSEGEANLIP GYFSASQQHS  300
NLEGLRQVGM GVSRGLTMHD MSLEQPNAAH YIEEEKKGKV EASMGFVTSA SAAAVGTEGD  360
SETNLTRVQS EQAHGITNAS DWPPRPANHH PNALGNGNLF FSQNGHHAWK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	2e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	2e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	2e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	2e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
6byy_A	2e-17	1	85	1	85	MEF2 CHIMERA
6byy_B	2e-17	1	85	1	85	MEF2 CHIMERA
6byy_C	2e-17	1	85	1	85	MEF2 CHIMERA
6byy_D	2e-17	1	85	1	85	MEF2 CHIMERA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16646	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024383341.1	0.0	MADS-box protein 04g005320-like isoform X2
TrEMBL	A9RGL4	0.0	A9RGL4_PHYPA; MIKC MADS--domain protein PPMA8
STRING	PP1S8_101V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-30	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Pp3c8_6920V3.3.p
Entrez Gene	5916475

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]