PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_13355V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 399aa MW: 43201.1 Da PI: 7.3398

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_13355V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.7	4.6e-37	55	112	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk+ ++ Pp3c6_13355V3.1.p 55 KVIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKIRT 112 6789**************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-24	52	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	56	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.351	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MHLPVNHQIL LGDFEDDSNE ELDARIASSG SGSGGGDSPG SSRGNGGCIR SRPVKVIPCP 60 RCQSMNTKFC YYNNYSVNQP RHFCRNCQRY WTVGGTLRNV PVGGGSRKKI RTRNRNDTYL 120 LGGTPQTSPV GSLFGSGGDL LSSSACMQQL SMLPPTGGML GFGNQTSGFA PAVPPLPYLQ 180 FALEYTQGLH PSVQKPLAGL QEVPDIQSLY DTQASQAPQV NSSIFNSSSS LMLNSGVTLP 240 TLHAPSHSDT LPSVMAKTGL WTVAAQQLPS LNGTTQVQSS WQDKQSKPSM SSQLQHRSGY 300 VERMNPINHM NAIMFPHNVK PGSWEAALMH SRPVMNDRLV PHTSWDENQS STHTNLSPNA 360 SSTTDDERCP SNNCFPHTYE DVSQSWVDLQ ASDALSFQ*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MHLPVNHQIL LGDFEDDSNE ELDARIASSG SGSGGGDSPG SSRGNGGCIR SRPVKVIPCP  60
RCQSMNTKFC YYNNYSVNQP RHFCRNCQRY WTVGGTLRNV PVGGGSRKKI RTRNRNDTYL  120
LGGTPQTSPV GSLFGSGGDL LSSSACMQQL SMLPPTGGML GFGNQTSGFA PAVPPLPYLQ  180
FALEYTQGLH PSVQKPLAGL QEVPDIQSLY DTQASQAPQV NSSIFNSSSS LMLNSGVTLP  240
TLHAPSHSDT LPSVMAKTGL WTVAAQQLPS LNGTTQVQSS WQDKQSKPSM SSQLQHRSGY  300
VERMNPINHM NAIMFPHNVK PGSWEAALMH SRPVMNDRLV PHTSWDENQS STHTNLSPNA  360
SSTTDDERCP SNNCFPHTYE DVSQSWVDLQ ASDALSFQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377387.1	0.0	dof zinc finger protein DOF2.5-like
TrEMBL	A0A2K1KFI3	0.0	A0A2K1KFI3_PHYPA; Uncharacterized protein
STRING	PP1S177_76V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	4e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Pp3c6_13355V3.1.p