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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_11670V3.7.p | ||||||||
Common Name | PHYPADRAFT_164706, PpLFY2, PPLFY2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 335aa MW: 38349.9 Da PI: 7.4994 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 471.4 | 5.7e-144 | 16 | 332 | 40 | 385 |
FLO_LFY 40 aaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrk 131 +a a r+ r+l+elfk++Gv+ +tv+ ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr + ee e++r+ Pp3c3_11670V3.7.p 16 GTALAGRESRRLKELFKDFGVQPSTVTVMGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVVEEL-EQQRM- 105 4566778899*******************************************************************99888744.45555. PP FLO_LFY 132 llsedeetaldalsqeg..lseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsg 221 + als+e eep+ + g+++l++ +l++ ++ +s++e kka+k++q+++++ke g Pp3c3_11670V3.7.p 106 --------DMAALSNEKkrRLEEPSDGLLLK--DGNGSLEALGLLGLTDPDSDSEGKKAAKRRQRKRRSKE-------------------VG 168 ........34566666521334444444334..44555669999***999999999999887777777766...................78 PP FLO_LFY 222 edgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhc 313 +dgeer+rehPfivtepge a+gkknGLDYLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCYalhc Pp3c3_11670V3.7.p 169 DDGEERPREHPFIVTEPGEPAKGKKNGLDYLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCYALHC 260 99****************************************************************************************** PP FLO_LFY 314 LdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 Ld e+sn+lr++fkergenvGaw+qacy plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+ Pp3c3_11670V3.7.p 261 LDVETSNNLRKEFKERGENVGAWCQACYFPLVTLARQNEWDIDDLFNQNDKLRIWYVPTKLRQLCHIERMKH 332 *********************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 7.4E-114 | 15 | 332 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVQAEPTALL YKRPDGTALA GRESRRLKEL FKDFGVQPST VTVMGQMGFT LSTLINMKDE 60 EVDFVIKSMI EEYHLDLLMG EQFGIKAAVR AKRRLVVEEL EQQRMDMAAL SNEKKRRLEE 120 PSDGLLLKDG NGSLEALGLL GLTDPDSDSE GKKAAKRRQR KRRSKEVGDD GEERPREHPF 180 IVTEPGEPAK GKKNGLDYLF DLYEQCGKFL EEVQHIAKEK GEKCPSKVTN EVFRHAKLTG 240 AGYINKPKMR DYVHCYALHC LDVETSNNLR KEFKERGENV GAWCQACYFP LVTLARQNEW 300 DIDDLFNQND KLRIWYVPTK LRQLCHIERM KHGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bhk_A | 1e-124 | 166 | 333 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
4bhk_B | 1e-124 | 166 | 333 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 158 | KKAAKRRQ |
2 | 158 | 163 | QRKRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.164 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB052252 | 0.0 | AB052252.1 Physcomitrella patens PPLFY2 mRNA for FLORICAULA/LEAFY homolog 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369276.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X3 | ||||
Refseq | XP_024369278.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X3 | ||||
Refseq | XP_024369279.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X3 | ||||
Refseq | XP_024369280.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X3 | ||||
Refseq | XP_024369281.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X3 | ||||
Swissprot | O04407 | 1e-134 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | A0A2K1KU34 | 0.0 | A0A2K1KU34_PHYPA; Uncharacterized protein | ||||
STRING | PP1S74_224V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 3e-85 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_11670V3.7.p |
Entrez Gene | 5928432 |
Publications ? help Back to Top | |||
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