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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_11670V3.2.p | ||||||||
Common Name | PHYPADRAFT_164706, PpLFY2, PPLFY2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 349aa MW: 39962.7 Da PI: 6.8457 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 473.1 | 1.9e-144 | 29 | 346 | 39 | 385 |
FLO_LFY 39 aaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrr 130 +a a r+ r+l+elfk++Gv+ +tv+ ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr + ee e++r+ Pp3c3_11670V3.2.p 29 DGTALAGRESRRLKELFKDFGVQPSTVTVMGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVVEEL-EQQRM 119 55667788899*******************************************************************99888744.45555 PP FLO_LFY 131 kllsedeetaldalsqeg..lseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegs 220 + als+e eep+ + g+++l++ +l++ ++ +s++e kka+k++q+++++ke Pp3c3_11670V3.2.p 120 ---------DMAALSNEKkrRLEEPSDGLLLK--DGNGSLEALGLLGLTDPDSDSEGKKAAKRRQRKRRSKE-------------------V 181 .........34566666521334444444334..44555669999***999999999999887777777766...................7 PP FLO_LFY 221 gedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalh 312 g+dgeer+rehPfivtepge a+gkknGLDYLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCYalh Pp3c3_11670V3.2.p 182 GDDGEERPREHPFIVTEPGEPAKGKKNGLDYLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCYALH 273 899***************************************************************************************** PP FLO_LFY 313 cLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 cLd e+sn+lr++fkergenvGaw+qacy plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+ Pp3c3_11670V3.2.p 274 CLDVETSNNLRKEFKERGENVGAWCQACYFPLVTLARQNEWDIDDLFNQNDKLRIWYVPTKLRQLCHIERMKH 346 **********************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 4.4E-114 | 27 | 346 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MVDDCPVHNM AHFDMVQAEP TALLYKRPDG TALAGRESRR LKELFKDFGV QPSTVTVMGQ 60 MGFTLSTLIN MKDEEVDFVI KSMIEEYHLD LLMGEQFGIK AAVRAKRRLV VEELEQQRMD 120 MAALSNEKKR RLEEPSDGLL LKDGNGSLEA LGLLGLTDPD SDSEGKKAAK RRQRKRRSKE 180 VGDDGEERPR EHPFIVTEPG EPAKGKKNGL DYLFDLYEQC GKFLEEVQHI AKEKGEKCPS 240 KVTNEVFRHA KLTGAGYINK PKMRDYVHCY ALHCLDVETS NNLRKEFKER GENVGAWCQA 300 CYFPLVTLAR QNEWDIDDLF NQNDKLRIWY VPTKLRQLCH IERMKHGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bhk_A | 1e-123 | 180 | 347 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
4bhk_B | 1e-123 | 180 | 347 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 172 | KKAAKRRQ |
2 | 172 | 177 | QRKRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.164 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB052252 | 0.0 | AB052252.1 Physcomitrella patens PPLFY2 mRNA for FLORICAULA/LEAFY homolog 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369275.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X2 | ||||
Swissprot | O04407 | 1e-133 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | A0A2K1KU34 | 0.0 | A0A2K1KU34_PHYPA; Uncharacterized protein | ||||
STRING | PP1S74_224V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 5e-85 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_11670V3.2.p |
Entrez Gene | 5928432 |
Publications ? help Back to Top | |||
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