PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_33310V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 361aa MW: 40077 Da PI: 7.6998 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.2e-16 | 293 | 343 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y GVr+++ +g+++Ae+rd + ng ++lg+f+tae+Aa a+++a+ +++ Pp3c2_33310V3.2.p 293 SHYIGVRRRP-WGKFAAEVRDSKRNG--VWVWLGTFDTAEQAALAYDRAAFNMR 343 78********.**********43355..***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.0E-13 | 293 | 343 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.29E-26 | 293 | 352 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-20 | 293 | 354 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-27 | 294 | 353 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.745 | 294 | 352 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-28 | 294 | 358 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 295 | 306 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 318 | 334 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MTAKVGVQQC GLQSWELDCL TTRTVYQKKV LESLHRFLIV EDENLDHFIL ESQNGQLPYR 60 CPVPLSPKSP LPFLTSNFTS SSSRQTGGAY GVPCSSGQLI NGACTNGDVS TSEMDQACDN 120 SSQNSNSNKL ISTLKRKFGG SFVKEVRSTM KPFVKELTEG DFLCLDNLQE QPVSMWSKET 180 SSTESSNSLT TRRPAISPLT IPPSPQPDNP CRSPEDFRRE FSGPLPMDQN DSDDMFIYSI 240 LKDASHSAAD SSILQETTFD PMKSIQVKIK QERSPRATTT SQKPAEMKPS VKSHYIGVRR 300 RPWGKFAAEV RDSKRNGVWV WLGTFDTAEQ AALAYDRAAF NMRDSRAILN FPTRITTDSS 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 294 | 355 | 2 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-28 | 294 | 357 | 5 | 68 | ATERF1 |
3gcc_A | 2e-28 | 294 | 357 | 5 | 68 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385422.1 | 1e-96 | ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A2K1L443 | 0.0 | A0A2K1L443_PHYPA; Uncharacterized protein | ||||
STRING | PP1S265_50V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-38 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_33310V3.2.p |