PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_26790V3.2.p | ||||||||
Common Name | PHYPADRAFT_160509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 615aa MW: 67670.2 Da PI: 8.4193 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 50.5 | 4.2e-16 | 219 | 257 | 6 | 44 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG 44 ++cprC+s++ kf y+nn l+qPry C +C+ ++t+GG Pp3c2_26790V3.2.p 219 KECPRCNSKEVKFKYFNNKKLNQPRYQCLSCKDFFTHGG 257 68************************************9 PP | |||||||
2 | zf-Dof | 27.7 | 5.5e-09 | 311 | 341 | 7 | 37 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCr 37 c +C s+nt f y nn +l qPry C C+ Pp3c2_26790V3.2.p 311 LCRKCGSKNTAFKYLNNGQLDQPRYKCLDCK 341 699***************************8 PP | |||||||
3 | zf-Dof | 37.8 | 4e-12 | 414 | 454 | 6 | 46 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal 46 ++cp C+ t+t+f y+nn +++qPry C C++y+t + Pp3c2_26790V3.2.p 414 KPCPSCKKTKTRFKYFNNKNMKQPRYECLDCHQYFTYKTEF 454 58*********************************976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 5.4E-6 | 201 | 250 | No hit | No description |
ProDom | PD007478 | 1.0E-7 | 218 | 257 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.0E-16 | 219 | 258 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 15.528 | 219 | 273 | IPR003851 | Zinc finger, Dof-type |
Gene3D | G3DSA:3.90.10.10 | 5.4E-6 | 300 | 344 | No hit | No description |
Pfam | PF02701 | 4.8E-9 | 311 | 343 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-12 | 414 | 460 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-6 | 415 | 461 | IPR003851 | Zinc finger, Dof-type |
Gene3D | G3DSA:3.90.10.10 | 5.4E-6 | 416 | 447 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MTNRAESSKA LLYTLLSSLD SDAQMHVELK SLKNTLHFGT SSRLDDADTK LELKTALGEE 60 DEIRNLCYRA SPSSLHSKSA DLKAILEEPG EKTLYIEIRK SPSAGGGCGA KSLHTNFLSL 120 SDGHRSCSDV YESTRLADYM LQSDHQFLEI ESGAGHSNVD DMQRPGSANE ELLETAHAIV 180 NMADLKSNTV LPQEYHEDGT PRRRQKVAVE PKELVGIPKE CPRCNSKEVK FKYFNNKKLN 240 QPRYQCLSCK DFFTHGGKKL ATEAASPSAS VQLMLPDGSF NILPIQSLDG KGKERKRKAK 300 EPPQFAGMEK LCRKCGSKNT AFKYLNNGQL DQPRYKCLDC KGMFQLHNKR VRPSSSGDVN 360 TAALLSDLSK ETTSVESASV PLESALLICG PRVAKQTERK RKAMEPEHLV GVVKPCPSCK 420 KTKTRFKYFN NKNMKQPRYE CLDCHQYFTY KTEFNQVNSG AFGGDQGFVA SITAVVNEGN 480 SEGPNGSDRN GRDKEVEGNT SLTGRSDSER IYEQDLLRLN GEGDANAINS GHLKDRMKDG 540 GSGLASSGFI GTNMRVRDTG EVINVRRGLG QVEREGGQGG GTALEVIGFR RMLDLPGSLE 600 KHDKVFDSTG VKQQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1999 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359748.1 | 0.0 | uncharacterized protein LOC112274455 | ||||
Refseq | XP_024359756.1 | 0.0 | uncharacterized protein LOC112274455 | ||||
Refseq | XP_024359765.1 | 0.0 | uncharacterized protein LOC112274455 | ||||
Refseq | XP_024359776.1 | 0.0 | uncharacterized protein LOC112274455 | ||||
Refseq | XP_024359782.1 | 0.0 | uncharacterized protein LOC112274455 | ||||
Refseq | XP_024365391.1 | 0.0 | uncharacterized protein LOC112277398 | ||||
Refseq | XP_024365399.1 | 0.0 | uncharacterized protein LOC112277398 | ||||
Refseq | XP_024365408.1 | 0.0 | uncharacterized protein LOC112277398 | ||||
Refseq | XP_024365418.1 | 0.0 | uncharacterized protein LOC112277398 | ||||
Refseq | XP_024365428.1 | 0.0 | uncharacterized protein LOC112277398 | ||||
TrEMBL | A0A2K1L354 | 0.0 | A0A2K1L354_PHYPA; Uncharacterized protein | ||||
STRING | PP1S22_366V6.1 | 0.0 | (Physcomitrella patens) | ||||
STRING | PP1S22_373V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 1e-12 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_26790V3.2.p |
Entrez Gene | 5919711 |
Publications ? help Back to Top | |||
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