PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_25760V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 26046.3 Da PI: 9.0951 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.1e-12 | 76 | 120 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 ++kG+r+++ gr+ +eIr + ++++++lg+f taeeAa+a +a Pp3c2_25760V3.4.p 76 RFKGIRYRPELGRYISEIRPA---QpRKRKIWLGTFKTAEEAARAFDA 120 69***************9982...3567*****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.86E-12 | 76 | 136 | No hit | No description |
PROSITE profile | PS51032 | 14.842 | 76 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-8 | 76 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-17 | 76 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-7 | 76 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-11 | 76 | 133 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
CDDEELIHQF GVAHLQVAGE RCCARRRMQG EATVAIKQYM ATSGRYGDDY GVVCKRSPPG 60 RAKFLEFRHD VVQQERFKGI RYRPELGRYI SEIRPAQPRK RKIWLGTFKT AEEAARAFDA 120 GIFYTKKPVE YNFEDSPSIL EPLPENLSPE QEHIEIQKRA KAAAARVEPS QSERPHPGTY 180 AKFSDSYSSQ KRSKRYFNQD NEYCDAQVHR PPREIQFWEV LNRS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC159398 | 0.0 | AC159398.2 Physcomitrella patens clone JGIASYB-5K21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401788.1 | 1e-107 | ethylene-responsive transcription factor RAP2-9-like | ||||
TrEMBL | A9SU62 | 1e-141 | A9SU62_PHYPA; Predicted protein | ||||
STRING | PP1S119_43V6.1 | 1e-144 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 9e-15 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_25760V3.4.p |