PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_4764V3.2.p

Common Name

PHYPADRAFT_70276

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Protein Properties

Length: 930aa MW: 103367 Da PI: 10.0717

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_4764V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.7	5.1e-14	77	170	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ k++ l lp f++++g +k + l+ +sg++W v+l++ + + + +++GWkeF+++++L+ gD ++F+l + s Pp3c21_4764V3.2.p 77 KITTVRKKNCELHLPAFFFKDYGDM--FQKFVLLQGPSGQVWPVNLCVscgsT----TgrptVRFSRGWKEFAHDHHLELGDKLIFTLASFS 162 456667889***********755..6678999********8865433....2346699*********************97657 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f v+vf+ Pp3c21_4764V3.2.p 163 RF--SVQVFD 170 77..888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-19	66	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.88E-20	68	176	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.68E-19	70	170	No hit	No description
SMART	SM01019	2.1E-10	72	172	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.281	73	172	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.0E-12	76	170	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MEVAVDVDAT EYPGYISCMF CTARCFKLHA SHGAVKASSK VCAGSGSSRS RESLQAGAQK 60 NSSNRKHRAP FFVKTVKITT VRKKNCELHL PAFFFKDYGD MFQKFVLLQG PSGQVWPVNL 120 CVSCGSTTGR PTVRFSRGWK EFAHDHHLEL GDKLIFTLAS FSRFSVQVFD PLGKKKQTSS 180 TAVSGWSFRR EDLMDDEISR KKKSIFVNWQ NKIVRESTPV LGGNDVSKKS AVAGNGHASR 240 MAMLCRHLKQ ENKKMEKRNA LIAKFRTRSQ EKSIPLSLLG QKVSLGSGSA SSSDSDGSFY 300 LNDEQDYDTK LLDWEPLEIA SPSRIWPLAF NSNDSSTAIV TAQQQNSVVD SRTQPVNLSR 360 TSSPSSPTSS KFHGGLENSE QGQCRSNIVD RLEDEKDLLQ ACWKRNLKST TSTAWPSGEM 420 RHDVQPSPRS HVFNVRPISA LEGPHEIDAV CTPLSPTLSL SHYLESSSPE AVQSRHGPES 480 RQLQQRFSFS NQDLAVRNHS DYRGHRTRDC SDNSGSVSED LTLQSIHAQS AKIPIGGISN 540 SSNRSSVTIE KCTHWSRIPL ENRQVRLFDS AHGIKSSRVK ETNVPSSKNL SSDLELRTQS 600 SSKMPLNSLK PTSSRNDLSL AYFLNQPRPN ARRQSHGEER IAADQFTGGT CTDAKGSISQ 660 REVDHVVTTM GPSLQKTQKI VSFTDALPSG AVSLQNPLDV RSSDKSNVCR NETTLRVEKA 720 GQMQRPAELP ETKTARCCAN ENFNICTTSS ESKENIPTEI PASIGPLVVF NSSARVENFP 780 NEVDRFQQKE LGLTSKRGGK ENIKSSTKRN RTENRVAPLV LTDHNRNPHH QKMTTITNVC 840 ANSPTKENKP ALPHRKDVGI TEYLEQKRIA RKTRPRLKKK PTPGVNNEDS AGGDIFEVEE 900 SWDTWREIIR QRDAASSHHL RTPVRLKPR*

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MEVAVDVDAT EYPGYISCMF CTARCFKLHA SHGAVKASSK VCAGSGSSRS RESLQAGAQK  60
NSSNRKHRAP FFVKTVKITT VRKKNCELHL PAFFFKDYGD MFQKFVLLQG PSGQVWPVNL  120
CVSCGSTTGR PTVRFSRGWK EFAHDHHLEL GDKLIFTLAS FSRFSVQVFD PLGKKKQTSS  180
TAVSGWSFRR EDLMDDEISR KKKSIFVNWQ NKIVRESTPV LGGNDVSKKS AVAGNGHASR  240
MAMLCRHLKQ ENKKMEKRNA LIAKFRTRSQ EKSIPLSLLG QKVSLGSGSA SSSDSDGSFY  300
LNDEQDYDTK LLDWEPLEIA SPSRIWPLAF NSNDSSTAIV TAQQQNSVVD SRTQPVNLSR  360
TSSPSSPTSS KFHGGLENSE QGQCRSNIVD RLEDEKDLLQ ACWKRNLKST TSTAWPSGEM  420
RHDVQPSPRS HVFNVRPISA LEGPHEIDAV CTPLSPTLSL SHYLESSSPE AVQSRHGPES  480
RQLQQRFSFS NQDLAVRNHS DYRGHRTRDC SDNSGSVSED LTLQSIHAQS AKIPIGGISN  540
SSNRSSVTIE KCTHWSRIPL ENRQVRLFDS AHGIKSSRVK ETNVPSSKNL SSDLELRTQS  600
SSKMPLNSLK PTSSRNDLSL AYFLNQPRPN ARRQSHGEER IAADQFTGGT CTDAKGSISQ  660
REVDHVVTTM GPSLQKTQKI VSFTDALPSG AVSLQNPLDV RSSDKSNVCR NETTLRVEKA  720
GQMQRPAELP ETKTARCCAN ENFNICTTSS ESKENIPTEI PASIGPLVVF NSSARVENFP  780
NEVDRFQQKE LGLTSKRGGK ENIKSSTKRN RTENRVAPLV LTDHNRNPHH QKMTTITNVC  840
ANSPTKENKP ALPHRKDVGI TEYLEQKRIA RKTRPRLKKK PTPGVNNEDS AGGDIFEVEE  900
SWDTWREIIR QRDAASSHHL RTPVRLKPR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	866	880	KRIARKTRPRLKKKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358780.1	0.0	uncharacterized protein LOC112273937 isoform X1
TrEMBL	A0A2K1IQR7	0.0	A0A2K1IQR7_PHYPA; Uncharacterized protein
STRING	PP1S27_190V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Pp3c21_4764V3.2.p
Entrez Gene	5920620

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]