PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_4760V3.1.p | ||||||||
Common Name | PHYPADRAFT_70276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 1021aa MW: 113246 Da PI: 10 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.8e-14 | 77 | 170 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ k++ l lp f++++g +k + l+ +sg++W v+l++ + + + +++GWkeF+++++L+ gD ++F+l + s Pp3c21_4760V3.1.p 77 KITTVRKKNCELHLPAFFFKDYGDM--FQKFVLLQGPSGQVWPVNLCVscgsT----TgrptVRFSRGWKEFAHDHHLELGDKLIFTLASFS 162 456667889*************755..6678999************8865433....2346699***********************97657 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f v+vf+ Pp3c21_4760V3.1.p 163 RF--SVQVFD 170 77..888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-19 | 66 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 68 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.44E-19 | 70 | 170 | No hit | No description |
SMART | SM01019 | 2.1E-10 | 72 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.281 | 73 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-12 | 76 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MEVAVDVDAT EYPGYISCMF CTARCFKLHA SHGAVKASSK VCAGSGSSRS RESLQAGAQK 60 NSSNRKHRAP FFVKTVKITT VRKKNCELHL PAFFFKDYGD MFQKFVLLQG PSGQVWPVNL 120 CVSCGSTTGR PTVRFSRGWK EFAHDHHLEL GDKLIFTLAS FSRFSVQVFD PLGKKKQTSS 180 TAVSGWSFRR EDLMDDEISR KKKSIFVNWQ NKIVRESTPV LGGNDVSKKS AVAGNGHASR 240 MAMLCRHLKQ ENKKMEKRNA LIAKFRTRSQ EKSIPLSLLG QKVSLGSGSA SSSDSDGSFY 300 LNDEQDYDTK LLDWEPLEIA SPSRIWPLAF NSNDSSTAIV TAQQQNSVVD SRTQPVNLSR 360 TSSPSSPTSS KFHGGLENSE QGQCRSNIVD RLEDEKDLLQ ACWKRNLKST TSTAWPSGEM 420 RHDVQPSPRS HVFNVRPISA LEGPHEIDAV CTPLSPTLSL SHYLESSSPE AVQSRHGPES 480 RQLQQRFSFS NQDLAVRNHS DYRGHRTRDC SDNSGSVSED LTLQSIHAQS AKIPIGGISN 540 SSNRSSVTIE KCTHWSRIPL ENRQVRLFDS AHGIKSSRVK ETNVPSSKNL SSDLELRTQS 600 SSKMPLNSLK PTSSRNDLSL AYFLNQPRPN ARRQSHGEER IAADQFTGGT CTDAKGSISQ 660 REVDHVVTTM GPSLQKTQKI VSFTDALPSG AVSLQNPLDV RSSDKSNVCR NETTLRVEKA 720 GQMQRPAELP ETKTARCCAN ENFNICTTSS ESKENIPTEI PASIGPLVVF NSSARVENFP 780 NEVDRFQQKE LGLTSKRGGK ENIKSSTKRN RTENRVAPLV LTDHNRNPHH QKMTTITNVC 840 ANSPTKENKP ALPHRKDVGI TEYLEQKRIA RKTRPRLKKK PTPGVSNVAV SQIKAVFTTE 900 DIKPFVNASS NFQLDSSSRI RSQINASNSR KTTPMEEKVQ KLGGTFGGME RAQTSHMKSS 960 IGNRCDLVEL DSIASEDNED SAGGDIFEVE ESWDTWREII RQRDAASSHH LRTPVRLKPR 1020 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 866 | 880 | KRIARKTRPRLKKKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358780.1 | 0.0 | uncharacterized protein LOC112273937 isoform X1 | ||||
TrEMBL | A0A2K1IQR7 | 0.0 | A0A2K1IQR7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S27_190V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_4760V3.1.p |
Entrez Gene | 5920620 |
Publications ? help Back to Top | |||
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