PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_14300V3.1.p
Common NamePHYPADRAFT_176001
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 652aa    MW: 71536.8 Da    PI: 6.3471
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_14300V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.2e-07332353526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C  f + G C++G++CkF H+
  Pp3c16_14300V3.1.p 332 VCFEFVKQGSCSRGETCKFKHD 353
                         56678899*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.08E-5411244No hitNo description
PROSITE profilePS5010313.056327355IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5331355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4331353IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4332353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281359387IPR000571Zinc finger, CCCH-type
SMARTSM003560.013360386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5364389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4365388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474395423IPR000571Zinc finger, CCCH-type
SMARTSM003560.025397422IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5400426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5401428IPR000571Zinc finger, CCCH-type
SuperFamilySSF541976.8E-11429537IPR011146HIT-like domain
PfamPF046778.6E-34431544IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.103.8E-7434512IPR011146HIT-like domain
PfamPF046761.1E-13567648IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MNGGKQAPRI LVFGDVLGRL DALFKRVQSV NKSNGPFDAA LCVGQFFPED ERWVEGMEGY  60
FTGEKPVPLP TYFIGDYGEG ANSLLAPARK TALDLGFSMG GIPVCDNLFY LKGSGILNLK  120
GLRIAYLSGR YIPDVYQNAR GAEASGGHFE DDVDALRAIA DDKEITDIFL SNEWPLGVHN  180
AADSSSDPNG IDLASTGSDI AAELASLLKP RYHFAGSEGV FYAREPYINP DSTHVTRFIG  240
VGAVGNDKKQ KFAHALAPTP ASEMSPLDLA ARPTNTTPSP YIKGAHNKST TGTTQKRDVS  300
QMDKANEENV QHWRYDTSQG KRQKRNDGGD RVCFEFVKQG SCSRGETCKF KHDLGNGVPI  360
PKGACFDFVT KGRCEKGADC RFKHSLEDWG PAEKALPPGS CFDFFRKGQC ERGSECRFSH  420
SLDDPRPPRA PPSACWFCLS SPNIETHLVV SVGDHCYCAI AKGPLCPGHV LILPIEHQPS  480
IVSLPSDAEL ELDKYKHSIR ECFKKQGKAT IFFERYLQLR AGTHAHLQAV PIPLSMASLA  540
LSSFVSSAKE VGFSFEVIHQ EDNDNEAKQR LKELVGGGVN YFIVELHEGT LLVHPLPQGE  600
KLPMQFGREV LAKILGTPER GDWKQCKLDV SEETALADQF KEQFQEFDPM P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U2e-13430648670887CWF19-like protein 2
6id1_U2e-13430648670887CWF19-like protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.131330.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399682.10.0zinc finger CCCH domain-containing protein 59-like isoform X1
TrEMBLA0A2K1J8J00.0A0A2K1J8J0_PHYPA; Uncharacterized protein
STRINGPP1S15_97V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP534877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-08C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]