PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_20000V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WOX | ||||||||
Protein Properties | Length: 285aa MW: 30745.9 Da PI: 5.9098 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 6e-21 | 116 | 176 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lFe+ + +p++++++e++++l ++e++V++WFqNr+a+ k+ Pp3c15_20000V3.9.p 116 RQRWTPSQHQLQILEKLFEQgSGTPNKQRIKEITAELsqhgAISETNVYNWFQNRKARAKR 176 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.8 | 2.1e-32 | 115 | 178 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tPnk++i++itaeL+++G+i+++NV++WFQNrkaR ++kq Pp3c15_20000V3.9.p 115 ARQRWTPSQHQLQILEKLFEQGSGTPNKQRIKEITAELSQHGAISETNVYNWFQNRKARAKRKQ 178 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-18 | 107 | 180 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-16 | 110 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.916 | 112 | 177 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-13 | 114 | 181 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-18 | 116 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.38E-13 | 116 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MESESRLGRM MDMTPLGSGL QGQPVPGGAA LGLGPSLENS LPQPMYTRGS GQVMTEEQLE 60 TLRRQISVYA TICQQLVEMH KASVSQQASL PGILASGQIV SMDHLTGTPP HKSTARQRWT 120 PSQHQLQILE KLFEQGSGTP NKQRIKEITA ELSQHGAISE TNVYNWFQNR KARAKRKQQL 180 VTPRDGESEA DTDVESPKEK RTRQEGEQNQ DESGGVGDTN GGGNSDGAGN GVPEQRAANF 240 DQQDAASSAL LHSQTDTKPD ISSFNRSAGF DPHNVSQGIP PMMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1671 | 0.0 | gametophore| protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB699867 | 1e-163 | AB699867.1 Physcomitrella patens PpWOX13A gene for WUSCHEL-related homeobox protein 13A, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395861.1 | 0.0 | WUSCHEL-related homeobox 8-like isoform X2 | ||||
Refseq | XP_024395862.1 | 0.0 | WUSCHEL-related homeobox 8-like isoform X2 | ||||
Refseq | XP_024395863.1 | 0.0 | WUSCHEL-related homeobox 8-like isoform X2 | ||||
TrEMBL | A0A2K1JDT2 | 0.0 | A0A2K1JDT2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S224_106V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-50 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_20000V3.9.p |