PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_20000V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WOX
Protein Properties Length: 285aa    MW: 30745.9 Da    PI: 5.9098
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_20000V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.86e-21116176257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t++++ql++Le+lFe+ + +p++++++e++++l     ++e++V++WFqNr+a+ k+
  Pp3c15_20000V3.6.p 116 RQRWTPSQHQLQILEKLFEQgSGTPNKQRIKEITAELsqhgAISETNVYNWFQNRKARAKR 176
                         89*****************99**************************************97 PP
2Wus_type_Homeobox99.82.1e-32115178265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ar+RWtP+++Q++iLe+l+++G  tPnk++i++itaeL+++G+i+++NV++WFQNrkaR ++kq
  Pp3c15_20000V3.6.p 115 ARQRWTPSQHQLQILEKLFEQGSGTPNKQRIKEITAELSQHGAISETNVYNWFQNRKARAKRKQ 178
                         789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-18107180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-16110179IPR009057Homeodomain-like
PROSITE profilePS5007114.916112177IPR001356Homeobox domain
SMARTSM003891.3E-13114181IPR001356Homeobox domain
PfamPF000461.2E-18116176IPR001356Homeobox domain
CDDcd000865.38E-13116178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MESESRLGRM MDMTPLGSGL QGQPVPGGAA LGLGPSLENS LPQPMYTRGS GQVMTEEQLE  60
TLRRQISVYA TICQQLVEMH KASVSQQASL PGILASGQIV SMDHLTGTPP HKSTARQRWT  120
PSQHQLQILE KLFEQGSGTP NKQRIKEITA ELSQHGAISE TNVYNWFQNR KARAKRKQQL  180
VTPRDGESEA DTDVESPKEK RTRQEGEQNQ DESGGVGDTN GGGNSDGAGN GVPEQRAANF  240
DQQDAASSAL LHSQTDTKPD ISSFNRSAGF DPHNVSQGIP PMMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.16710.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6998671e-163AB699867.1 Physcomitrella patens PpWOX13A gene for WUSCHEL-related homeobox protein 13A, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395861.10.0WUSCHEL-related homeobox 8-like isoform X2
RefseqXP_024395862.10.0WUSCHEL-related homeobox 8-like isoform X2
RefseqXP_024395863.10.0WUSCHEL-related homeobox 8-like isoform X2
TrEMBLA0A2K1JDT20.0A0A2K1JDT2_PHYPA; Uncharacterized protein
STRINGPP1S224_106V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-50WUSCHEL related homeobox 13