PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c15_20000V3.15.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 336aa MW: 36518.6 Da PI: 6.7493 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.9e-21 | 167 | 227 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lFe+ + +p++++++e++++l ++e++V++WFqNr+a+ k+ Pp3c15_20000V3.15.p 167 RQRWTPSQHQLQILEKLFEQgSGTPNKQRIKEITAELsqhgAISETNVYNWFQNRKARAKR 227 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.4 | 2.7e-32 | 166 | 229 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tPnk++i++itaeL+++G+i+++NV++WFQNrkaR ++kq Pp3c15_20000V3.15.p 166 ARQRWTPSQHQLQILEKLFEQGSGTPNKQRIKEITAELSQHGAISETNVYNWFQNRKARAKRKQ 229 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-18 | 158 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-16 | 161 | 230 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.916 | 163 | 228 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-13 | 165 | 232 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.66E-13 | 167 | 229 | No hit | No description |
Pfam | PF00046 | 1.6E-18 | 167 | 227 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MTKSVPLTSL IHGYAILRTD LDTLEPLQGI HWKSSRLHLG VHRIENRQSN GMESESRLGR 60 MMDMTPLGSG LQGQPVPGGA ALGLGPSLEN SLPQPMYTRG SGQVMTEEQL ETLRRQISVY 120 ATICQQLVEM HKASVSQQAS LPGILASGQI VSMDHLTGTP PHKSTARQRW TPSQHQLQIL 180 EKLFEQGSGT PNKQRIKEIT AELSQHGAIS ETNVYNWFQN RKARAKRKQQ LVTPRDGESE 240 ADTDVESPKE KRTRQEGEQN QDESGGVGDT NGGGNSDGAG NGVPEQRAAN FDQQDAASSA 300 LLHSQTDTKP DISSFNRSAG FDPHNVSQGI PPMMS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.1671 | 0.0 | gametophore| protonema |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB699867 | 1e-163 | AB699867.1 Physcomitrella patens PpWOX13A gene for WUSCHEL-related homeobox protein 13A, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395858.1 | 0.0 | WUSCHEL-related homeobox 13-like isoform X1 | ||||
Refseq | XP_024395859.1 | 0.0 | WUSCHEL-related homeobox 13-like isoform X1 | ||||
Refseq | XP_024395860.1 | 0.0 | WUSCHEL-related homeobox 13-like isoform X1 | ||||
TrEMBL | A0A2K1JDT2 | 0.0 | A0A2K1JDT2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S224_106V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-50 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c15_20000V3.15.p |