PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_17790V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 386aa MW: 43426.4 Da PI: 7.5244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_17790V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	221	240	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Pp3c15_17790V3.2.p 221 FSCPVCNKTFNRYNNMQMHM 240 89*****************9 PP
2	zf-C2H2	12.3	0.00052	305	327	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ Pp3c15_17790V3.2.p 305 FMCRKCSKAFAVRGDWRTHEKNC 327 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.61E-5	217	243	No hit	No description
PROSITE profile	PS50157	10.305	221	248	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.5E-7	221	240	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	9.5E-5	221	240	No hit	No description
SMART	SM00355	0.025	221	243	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.86E-6	286	325	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-5	292	325	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	73	305	325	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MSSRYNPQSS VAVAHPILTF CEWLKPSQPG QSLPHYPVAI PCESLYPGSA SGSSCESYFP 60 AQPRSSNPIH RYPPVEQYGY SCNFQRQLQA QFYNQQARDE HEWRQQRHLQ KDVSSEPLPF 120 LSLSPPTGND DLSDPALRTA ILLPEASHAS EESDENVTVA LHIGPPSSDA MSMSRSTESP 180 SVYDSLSLVE RERLQRGQSR LHEGQYWIPT PAQILVGPTQ FSCPVCNKTF NRYNNMQMHM 240 WGHGSQYRKG PESLRGTQPT AMLRLACYCC SPGCRNNIDH PRSKPLKDFR TLQTHYKRKH 300 GIKPFMCRKC SKAFAVRGDW RTHEKNCGKL WFCTCGSDFK HKRSLKDHIR AFGNGHAAHG 360 IDSCEDDEDP VSEEDGDEEV SGGSH*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MSSRYNPQSS VAVAHPILTF CEWLKPSQPG QSLPHYPVAI PCESLYPGSA SGSSCESYFP  60
AQPRSSNPIH RYPPVEQYGY SCNFQRQLQA QFYNQQARDE HEWRQQRHLQ KDVSSEPLPF  120
LSLSPPTGND DLSDPALRTA ILLPEASHAS EESDENVTVA LHIGPPSSDA MSMSRSTESP  180
SVYDSLSLVE RERLQRGQSR LHEGQYWIPT PAQILVGPTQ FSCPVCNKTF NRYNNMQMHM  240
WGHGSQYRKG PESLRGTQPT AMLRLACYCC SPGCRNNIDH PRSKPLKDFR TLQTHYKRKH  300
GIKPFMCRKC SKAFAVRGDW RTHEKNCGKL WFCTCGSDFK HKRSLKDHIR AFGNGHAAHG  360
IDSCEDDEDP VSEEDGDEEV SGGSH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396645.1	0.0	zinc finger protein WIP6-like
Swissprot	Q9SVY1	1e-116	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2K1JDJ6	0.0	A0A2K1JDJ6_PHYPA; Uncharacterized protein
STRING	PP1S359_44V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c15_17790V3.2.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]