PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_24190V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 349aa MW: 37602.6 Da PI: 6.7784 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.2 | 1.7e-38 | 53 | 111 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt+GG+lrnvPvGgg+rk+ + Pp3c14_24190V3.3.p 53 PDKVLPCPRCESMNTKFCYYNNYSVTQPRHFCRQCQRYWTAGGTLRNVPVGGGSRKKSR 111 78999***************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-25 | 51 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-33 | 54 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MQLPAQQQND SAALVATVPH GSSNALNGGG DAPASPSSPG SPSKNAIATR EKPDKVLPCP 60 RCESMNTKFC YYNNYSVTQP RHFCRQCQRY WTAGGTLRNV PVGGGSRKKS RHPRGIAEPY 120 LQRSGAFGVA SSGEQSAMQN VGFQQMLTQD MVGLNFAQLP GFGPQNPHHY LPFSMDHTQV 180 AYVPMTNKPP CQEDLSNLHA MYGNAPMSAP TGGYYLAPEL GGENSGNAVK PEFWVNNMVA 240 PQVPVPGSNP NQTVNRNGCL DSSMLLNLGL NNRPSAQVSG NGKPVWDQQD VKRPLSQQKN 300 GSPPHGSSTI EEEGSTPTNE YSNSGYEEGD TVSSMWNDMQ HDMDNIFQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4317 | 2e-73 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394292.1 | 0.0 | dof zinc finger protein DOF4.3-like | ||||
TrEMBL | A0A2K1JJ50 | 0.0 | A0A2K1JJ50_PHYPA; Uncharacterized protein | ||||
STRING | PP1S69_113V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 5e-32 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_24190V3.3.p |