PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_24190V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 349aa MW: 37602.6 Da PI: 6.7784

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_24190V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.7e-38	53	111	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt+GG+lrnvPvGgg+rk+ + Pp3c14_24190V3.3.p 53 PDKVLPCPRCESMNTKFCYYNNYSVTQPRHFCRQCQRYWTAGGTLRNVPVGGGSRKKSR 111 78999***************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-25	51	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-33	54	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MQLPAQQQND SAALVATVPH GSSNALNGGG DAPASPSSPG SPSKNAIATR EKPDKVLPCP 60 RCESMNTKFC YYNNYSVTQP RHFCRQCQRY WTAGGTLRNV PVGGGSRKKS RHPRGIAEPY 120 LQRSGAFGVA SSGEQSAMQN VGFQQMLTQD MVGLNFAQLP GFGPQNPHHY LPFSMDHTQV 180 AYVPMTNKPP CQEDLSNLHA MYGNAPMSAP TGGYYLAPEL GGENSGNAVK PEFWVNNMVA 240 PQVPVPGSNP NQTVNRNGCL DSSMLLNLGL NNRPSAQVSG NGKPVWDQQD VKRPLSQQKN 300 GSPPHGSSTI EEEGSTPTNE YSNSGYEEGD TVSSMWNDMQ HDMDNIFQ*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MQLPAQQQND SAALVATVPH GSSNALNGGG DAPASPSSPG SPSKNAIATR EKPDKVLPCP  60
RCESMNTKFC YYNNYSVTQP RHFCRQCQRY WTAGGTLRNV PVGGGSRKKS RHPRGIAEPY  120
LQRSGAFGVA SSGEQSAMQN VGFQQMLTQD MVGLNFAQLP GFGPQNPHHY LPFSMDHTQV  180
AYVPMTNKPP CQEDLSNLHA MYGNAPMSAP TGGYYLAPEL GGENSGNAVK PEFWVNNMVA  240
PQVPVPGSNP NQTVNRNGCL DSSMLLNLGL NNRPSAQVSG NGKPVWDQQD VKRPLSQQKN  300
GSPPHGSSTI EEEGSTPTNE YSNSGYEEGD TVSSMWNDMQ HDMDNIFQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4317	2e-73	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394292.1	0.0	dof zinc finger protein DOF4.3-like
TrEMBL	A0A2K1JJ50	0.0	A0A2K1JJ50_PHYPA; Uncharacterized protein
STRING	PP1S69_113V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	5e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Pp3c14_24190V3.3.p