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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_8760V3.3.p | ||||||||
Common Name | PHYPADRAFT_163123, PpLFY1, PPLFY1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 350aa MW: 40263 Da PI: 7.2249 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 473.7 | 1.1e-144 | 30 | 347 | 39 | 385 |
FLO_LFY 39 aaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrr 130 +a r+ r+l+elfk++Gv+ +tva ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr +eee e++r+ Pp3c13_8760V3.3.p 30 DGVALVGRENRRLKELFKDFGVQPSTVAVMGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVEEEM-EQQRM 120 55667788899******************************************************************999888754.66666 PP FLO_LFY 131 kll.sedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsg 221 l ++e++ s++gl + g+++l++ +l++ ++ +s++e kk +k++q+++++ke g Pp3c13_8760V3.3.p 121 DLAaRSNEKKRRLEESSDGL----------LLKDGNGSLEALGLLGLTDPDSDSEGKKVAKRRQRKRRSKE-------------------VG 183 44322222222222333332..........23334555668999999999999999999887777777766...................89 PP FLO_LFY 222 edgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhc 313 edgeer+rehPfivtepge a+gkknGLDYLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCYalhc Pp3c13_8760V3.3.p 184 EDGEERPREHPFIVTEPGEPAKGKKNGLDYLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCYALHC 275 99****************************************************************************************** PP FLO_LFY 314 LdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 Ld e+sn+lr+++kergenvGaw+qacy plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+ Pp3c13_8760V3.3.p 276 LDVETSNNLRKEYKERGENVGAWCQACYFPLVKLARQNEWDIDDLFNRNDKLRIWYVPTKLRQLCHIERMKH 347 *********************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 5.0E-115 | 29 | 347 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MVDDCPVHNM QAQFDIVQAE PTALLYKRPD GVALVGRENR RLKELFKDFG VQPSTVAVMG 60 QMGFTLSTLI NMKDEEVDFV IKSMIEEYHL DLLMGEQFGI KAAVRAKRRL VEEEMEQQRM 120 DLAARSNEKK RRLEESSDGL LLKDGNGSLE ALGLLGLTDP DSDSEGKKVA KRRQRKRRSK 180 EVGEDGEERP REHPFIVTEP GEPAKGKKNG LDYLFDLYEQ CGKFLEEVQH IAKEKGEKCP 240 SKVTNEVFRH AKLTGAGYIN KPKMRDYVHC YALHCLDVET SNNLRKEYKE RGENVGAWCQ 300 ACYFPLVKLA RQNEWDIDDL FNRNDKLRIW YVPTKLRQLC HIERMKHGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bhk_A | 1e-126 | 181 | 348 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
4bhk_B | 1e-126 | 181 | 348 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 173 | KKVAKRRQ |
2 | 173 | 178 | QRKRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.165 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB052251 | 0.0 | AB052251.1 Physcomitrella patens PPLFY1 mRNA for FLORICAULA/LEAFY homolog 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391907.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X1 | ||||
Swissprot | O04407 | 1e-135 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | Q94IF5 | 0.0 | Q94IF5_PHYPA; FLORICAULA/LEAFY homolog 1 | ||||
STRING | PP1S52_67V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 3e-84 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_8760V3.3.p |
Entrez Gene | 5925185 |
Publications ? help Back to Top | |||
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