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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_8760V3.1.p | ||||||||
Common Name | PHYPADRAFT_163123, PpLFY1, PPLFY1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 292aa MW: 33766.5 Da PI: 7.4994 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 443.8 | 1.5e-135 | 1 | 289 | 68 | 385 |
FLO_LFY 68 iaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll.sedeetaldalsqeglseepvqeek 158 ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr +eee e++r+ l ++e++ s++gl Pp3c13_8760V3.1.p 1 MGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVEEEM-EQQRMDLAaRSNEKKRRLEESSDGL--------- 82 689*********************************************999888754.6666644322222222222333332......... PP FLO_LFY 159 eaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLD 250 + g+++l++ +l++ ++ +s++e kk +k++q+++++ke gedgeer+rehPfivtepge a+gkknGLD Pp3c13_8760V3.1.p 83 -LLKDGNGSLEALGLLGLTDPDSDSEGKKVAKRRQRKRRSKE-------------------VGEDGEERPREHPFIVTEPGEPAKGKKNGLD 154 .23334555668999999999999999999887777777766...................8999*************************** PP FLO_LFY 251 YLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacyk 342 YLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCYalhcLd e+sn+lr+++kergenvGaw+qacy Pp3c13_8760V3.1.p 155 YLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCYALHCLDVETSNNLRKEYKERGENVGAWCQACYF 246 ******************************************************************************************** PP FLO_LFY 343 plvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+ Pp3c13_8760V3.1.p 247 PLVKLARQNEWDIDDLFNRNDKLRIWYVPTKLRQLCHIERMKH 289 ****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 8.0E-107 | 2 | 289 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGQMGFTLST LINMKDEEVD FVIKSMIEEY HLDLLMGEQF GIKAAVRAKR RLVEEEMEQQ 60 RMDLAARSNE KKRRLEESSD GLLLKDGNGS LEALGLLGLT DPDSDSEGKK VAKRRQRKRR 120 SKEVGEDGEE RPREHPFIVT EPGEPAKGKK NGLDYLFDLY EQCGKFLEEV QHIAKEKGEK 180 CPSKVTNEVF RHAKLTGAGY INKPKMRDYV HCYALHCLDV ETSNNLRKEY KERGENVGAW 240 CQACYFPLVK LARQNEWDID DLFNRNDKLR IWYVPTKLRQ LCHIERMKHG E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bhk_A | 1e-127 | 121 | 290 | 2 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
4bhk_B | 1e-127 | 121 | 290 | 2 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 115 | KKVAKRRQ |
2 | 115 | 120 | QRKRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.165 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB052251 | 0.0 | AB052251.1 Physcomitrella patens PPLFY1 mRNA for FLORICAULA/LEAFY homolog 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391907.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X1 | ||||
Swissprot | O04407 | 1e-129 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | A0A2K1JLC4 | 0.0 | A0A2K1JLC4_PHYPA; Uncharacterized protein | ||||
TrEMBL | Q94IF5 | 0.0 | Q94IF5_PHYPA; FLORICAULA/LEAFY homolog 1 | ||||
STRING | PP1S52_67V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 5e-85 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_8760V3.1.p |
Entrez Gene | 5925185 |
Publications ? help Back to Top | |||
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