PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_23740V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 550aa MW: 61012.7 Da PI: 6.5875

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_23740V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	418	465	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR + ++ f Lr+l+P+ + K +Ka++L A+ Y+k+Lq Pp3c11_23740V3.6.p 418 VNHMMAERRRRMKQKENFTALRRLVPTiS------KADKASTLIDAITYLKDLQ 465 5899*********************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	414	485	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.659	415	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	418	465	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.24E-12	418	469	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-17	419	485	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-11	421	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MDQIHEVLSN DLLGVLPLQH TTSEHACSWD TLMFQADSHL GFHQDSAANN PSSLALQQPS 60 SEMMSRSISE MSLRFSEDLN RPFQSEFNLS DQVWSSNLSL NSDIFMHGQQ DTQLDSAIDK 120 VTTENLSTLH SHGGTPSTFL MPNPNAPSNP AHAEADFHVS QQVNQRIMTQ SASHGLMVSQ 180 ADRYRPWSGA ATSSSVSSQG DSSARLSASP EPQQPQIHHN PLPNSQNSTL DRTSSSGTLR 240 SLLNQNLRRT TSCGDQYEIQ KAFSLFEAQE MQEHWRQQAG QQPELAGAQA ATMNDKVTAL 300 KHDPGSLQRS TDDPPNLLKR SSNVSLVNQV SKVAGVLLRR KSLSALEVLK AVDTYHRETA 360 DKSLNLVQNI EEEPTGLATT VTENITPNLR GRRRWGMEHA SSSRGQGPIH VGHDEAAVNH 420 MMAERRRRMK QKENFTALRR LVPTISKADK ASTLIDAITY LKDLQNKIQE MKASKEDINQ 480 RCETLENKCR ELEDRNQQLV AMLSINHPSS SNQLDTLKSE LLQSFFPSEL KTSKAAGNPT 540 YSISSDYHM*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MDQIHEVLSN DLLGVLPLQH TTSEHACSWD TLMFQADSHL GFHQDSAANN PSSLALQQPS  60
SEMMSRSISE MSLRFSEDLN RPFQSEFNLS DQVWSSNLSL NSDIFMHGQQ DTQLDSAIDK  120
VTTENLSTLH SHGGTPSTFL MPNPNAPSNP AHAEADFHVS QQVNQRIMTQ SASHGLMVSQ  180
ADRYRPWSGA ATSSSVSSQG DSSARLSASP EPQQPQIHHN PLPNSQNSTL DRTSSSGTLR  240
SLLNQNLRRT TSCGDQYEIQ KAFSLFEAQE MQEHWRQQAG QQPELAGAQA ATMNDKVTAL  300
KHDPGSLQRS TDDPPNLLKR SSNVSLVNQV SKVAGVLLRR KSLSALEVLK AVDTYHRETA  360
DKSLNLVQNI EEEPTGLATT VTENITPNLR GRRRWGMEHA SSSRGQGPIH VGHDEAAVNH  420
MMAERRRRMK QKENFTALRR LVPTISKADK ASTLIDAITY LKDLQNKIQE MKASKEDINQ  480
RCETLENKCR ELEDRNQQLV AMLSINHPSS SNQLDTLKSE LLQSFFPSEL KTSKAAGNPT  540
YSISSDYHM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388221.1	0.0	uncharacterized protein LOC112288342 isoform X1
TrEMBL	A0A2K1JW02	0.0	A0A2K1JW02_PHYPA; Uncharacterized protein
STRING	PP1S31_58V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c11_23740V3.6.p