PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_12260V3.2.p | ||||||||
Common Name | PHYPADRAFT_175150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LSD | ||||||||
Protein Properties | Length: 188aa MW: 19770 Da PI: 8.1182 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.5 | 9e-13 | 19 | 43 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GA++VRCalC V Pp3c11_12260V3.2.p 19 CSGCRTLLVYPQGASNVRCALCSSV 43 **********************876 PP | |||||||
2 | zf-LSD1 | 46.2 | 7.3e-15 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sV+C++C+tV Pp3c11_12260V3.2.p 58 CGGCRTLLMYMRGATSVQCSCCHTV 82 ************************9 PP | |||||||
3 | zf-LSD1 | 42.1 | 1.5e-13 | 96 | 120 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ +L+Y +GA sV+CalC++V Pp3c11_12260V3.2.p 96 CGGCGMTLMYAYGAQSVKCALCQFV 120 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.6E-15 | 16 | 46 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.5E-12 | 19 | 43 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.0E-16 | 55 | 84 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 58 | 82 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.8E-11 | 93 | 123 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.1E-12 | 96 | 120 | IPR005735 | Zinc finger, LSD1-type |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MMPYPSMQGG QPQQGQLICS GCRTLLVYPQ GASNVRCALC SSVTQVPSHG TEMAQLVCGG 60 CRTLLMYMRG ATSVQCSCCH TVNLAMEAPQ VAHINCGGCG MTLMYAYGAQ SVKCALCQFV 120 TTITMPSMRV QLPSISQQPR PPQAHGGPPP ALTSSHTQTV VVENPMTMDE SGKLVSNVAV 180 GVSTDRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.609 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389231.1 | 1e-133 | protein LOL1-like | ||||
Swissprot | P94077 | 4e-59 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A2K1JUH0 | 1e-131 | A0A2K1JUH0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S11_54V6.1 | 1e-132 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-58 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_12260V3.2.p |
Entrez Gene | 5917191 |
Publications ? help Back to Top | |||
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