 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.017G120000.1 |
Common Name | POPTR_0005s15090g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
NF-YC |
Protein Properties |
Length: 234aa MW: 26828.7 Da PI: 4.8783 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.017G120000.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 127.5 | 4.8e-40 | 64 | 167 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
l fw++q i ++t k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlrswl++ ++krrtl+++di+ ++ + d+
Potri.017G120000.1 64 LDEFWNQQlleIYNTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIRQEDM 154
779*****877445555555999******************************************************************** PP
NF-YC 89 fdflvdivprdel 101
+fl +vp d++
Potri.017G120000.1 155 LNFLNRVVPCDHK 167
********99865 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MDLNQSIELD LASADPSPQE VENALPMNSS MLPYHQTTKE LVRVFSYANR SLFSYPLKQH 60 KQNLDEFWNQ QLLEIYNTTA SKSNNMLPLA RIKRVMKSDG DVKMISAETP ILFSKACELF 120 ILELTLRSWL QTASCKRRTL QRCDISRVIR QEDMLNFLNR VVPCDHKKED EVTKCTEEME 180 SLPNMQMPAF PFLDLNGEVM MDENSHEDPQ ELMIKPPMPS SDFTSGSASK WAN*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC209042 | 1e-106 | AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence. |