PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 359aa MW: 40936.6 Da PI: 7.0245

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G052700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	281	303	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Potri.016G052700.1 281 FMCRKCGKAFAVRGDWRTHEKNC 303 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.3E-6	197	216	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.58	197	219	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	197	224	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	199	219	IPR007087	Zinc finger, C2H2
SMART	SM00355	310	243	276	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.68E-6	263	301	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.5E-6	268	301	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	281	301	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	281	301	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MADPYSNFFT GWVKFNNNPL QHYPSPPQQL PYTHNFYTST TSPANHNQPY FHYYHNPPRS 60 PPLKEALPLL RLSPTRQGKE QDQQRQDDDE EEEEEIQELS CRAMDVDKIK YRAKDQESFF 120 SSCSANNKED EESVSVALHI GLPSPSAAEM ATVLSSSSEI TDKDGDGDDS VYPISRLNKG 180 QYWIPTPSQI LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR 240 LPCYCCAPGC KNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE 300 KNCGKLWYCI CGSDFKHKRS LKDHIKAFGS GHAAYGNDGF EEEDEPSSEV EQDNESMQ*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MADPYSNFFT GWVKFNNNPL QHYPSPPQQL PYTHNFYTST TSPANHNQPY FHYYHNPPRS  60
PPLKEALPLL RLSPTRQGKE QDQQRQDDDE EEEEEIQELS CRAMDVDKIK YRAKDQESFF  120
SSCSANNKED EESVSVALHI GLPSPSAAEM ATVLSSSSEI TDKDGDGDDS VYPISRLNKG  180
QYWIPTPSQI LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR  240
LPCYCCAPGC KNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE  300
KNCGKLWYCI CGSDFKHKRS LKDHIKAFGS GHAAYGNDGF EEEDEPSSEV EQDNESMQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G052700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323306.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-145	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	B9II50	0.0	B9II50_POPTR; Uncharacterized protein
STRING	POPTR_0016s05310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-136	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Potri.016G052700.1
Entrez Gene	7468965

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]