PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G138200.1
Common NamePOPTR_0015s13660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 328aa    MW: 35305.3 Da    PI: 6.5637
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G138200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.92.6e-3684171490
                 TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +++ +  ++++  ++a
  Potri.015G138200.1  84 PKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAVsVNGTLKIPTESPATAAA 171
                         5899**********************************************************77777444211122211111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3087180IPR005333Transcription factor, TCP
PROSITE profilePS5136927.18788142IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDSQNHHHHT IEEIDQEHSI TVANVSNQPD PTTLQLKEEA LTDPEESREL EEHDNNIRRI  60
NNGSSNSCLV VHQVQRQQEV VMAPKRNTKD RHTKVEGRGR RVRMPATCAA RIFQLTRELG  120
HKSDGETIRW LLEHAEPAII AATGTGTVPA IAVSVNGTLK IPTESPATAA ADSDADGLVH  180
KKKRKRPCNS DFVDLTEAAH QNSVSSGLAP IASTSPQGLV PLWPMGTFMF PQGSSVGVGG  240
SNQAQFWAFP ATSTTPFFNM AARPISSFVS AMQPGVQLAG SSTGGGGGGG GAQMLRDFSL  300
EIYDKKELQF LSHPVNHDHQ QAPCSES*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G138200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442051.10.0transcription factor TCP19
SwissprotQ9LT897e-89TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A3N7G1I00.0A0A3N7G1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.27e-86TCP family protein