PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G089100.4

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 320aa MW: 35592.2 Da PI: 8.5646

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G089100.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	23	41	7	25
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG CkyG C+F+H Potri.015G089100.4 23 QYYLRTGGCKYGKACRFNH 41 59***************** PP
2	zf-CCCH	36.2	1e-11	72	96	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C f++r+G CkyG++Ck++H+ Potri.015G089100.4 72 GEKQCEFYMRNGSCKYGATCKYNHP 96 6788********************9 PP
3	zf-CCCH	26.6	1e-08	207	232	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ lC++f+++G Ck+ ++Ck++H++ Potri.015G089100.4 207 GQQLCSYFMKFGDCKFKSNCKYHHPK 232 788*********************96 PP
4	zf-CCCH	36.4	8.6e-12	256	277	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++r+G+Ck+G+ CkF H+ Potri.015G089100.4 256 ICSYYSRYGICKFGPACKFDHS 277 8********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.07	16	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	20	43	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-6	23	41	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	24	44	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.263	70	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-5	70	97	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	72	97	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-9	72	96	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	75	95	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.615	205	233	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-4	205	232	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-6	207	232	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	208	234	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.5E-5	251	278	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	251	279	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-6	253	279	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-5	256	278	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-9	256	277	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MQYVWLKNDI LFLYYNYFLS LLQYYLRTGG CKYGKACRFN HTREKTFSVP PLKTPMPSIL 60 ELNFLGLPIR PGEKQCEFYM RNGSCKYGAT CKYNHPDPMA VGGSDLTSAF VNGGTTSLPA 120 PSPSSVGSWS SPRALNDPTP FVPYVFSPTR LPSQSSEWNG YQGTLYPPER SLHPPPSYAM 180 SNPATESNVY APQQQQTVVD EFPERPGQQL CSYFMKFGDC KFKSNCKYHH PKNRIPKSPS 240 LTLSDKGLPL RPDQIICSYY SRYGICKFGP ACKFDHSIQP PSSGSGDDQH TAFGNSVTQE 300 KARMAESGNG SDISVEQPV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G089100.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU223337	0.0	CU223337.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024442496.1	0.0	zinc finger CCCH domain-containing protein 67 isoform X1
Swissprot	Q9STM4	1e-101	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A2K1XK95	0.0	A0A2K1XK95_POPTR; Uncharacterized protein
STRING	POPTR_0012s09400.1	1e-156	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	8e-96	C3H family protein

Link Out ? help Back to Top
Phytozome	Potri.015G089100.4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]