PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G126100.1
Common NamePOPTR_0014s12090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 310aa    MW: 34988.8 Da    PI: 5.3026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G126100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1976124355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Potri.014G126100.1  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124
                         9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-3875138IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2275133IPR016177DNA-binding domain
PROSITE profilePS5103223.77575132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3275133IPR001471AP2/ERF domain
PfamPF008476.3E-1276124IPR001471AP2/ERF domain
CDDcd000181.00E-3376133No hitNo description
PRINTSPR003678.0E-127687IPR001471AP2/ERF domain
PRINTSPR003678.0E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MCGGAILAGL IPHRGHRVAA SEFWPNSSFN KPSPFDTYPS PLRNQEPFTL KRPQPTSGDH  60
EQVEKPNAKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR  120
KIRGKKAKVN FPNEDDHYYT SQNSNTKPFL YQAPTCHFSK GYDSGNVYDA YQIETFHSNG  180
LINEPIVSSG EDDSRSGSEE VTGLLGCNQN VESNNYMGQV KVEEEKLEEK KVMNKEVMVV  240
DLETGEEESE VQKLTEELMA YENFMKFYQI PYLDGQSTAP NGTTQESLVG NLWSFFDDGV  300
DAPVTSAPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G126100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320996.10.0ethylene-responsive transcription factor ERF071
TrEMBLB9I9P10.0B9I9P1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-33ethylene-responsive element binding protein