PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G094200.1
Common NamePOPTR_0014s08990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 409aa    MW: 44331 Da    PI: 8.3518
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G094200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.93.8e-22296358163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++elkrerrkq+NRe+ArrsR+RK+ae eeL+ kv++L++ N++Lk+e+++ +++++kl+ e+
  Potri.014G094200.1 296 DRELKRERRKQSNRESARRSRLRKQAEAEELAHKVETLTTVNMTLKSEIDQFTEKSQKLRLEN 358
                         689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.3E-3530122IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.1E-29163277No hitNo description
Gene3DG3DSA:1.20.5.1708.0E-17290355No hitNo description
SMARTSM003382.1E-21296360IPR004827Basic-leucine zipper domain
PfamPF001701.4E-20297358IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.289298361IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10299355No hitNo description
CDDcd147023.81E-19301350No hitNo description
PROSITE patternPS000360303318IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MILSVRELKQ FWRIISKLSK DFYFFWCFTM GNNEEGKSSA SDKSSPAQQD QTSIHVYPDW  60
AAIQAYYGSR VALPPYYNSG VASGHAPHPY MWGPPQPMMA TYGAPYAAIY SHGGVYAHPA  120
VPILEIQKLI CLHCVSICNS CTIMQAHTPL SAETPTKSSG NTDQGLMKKL KGFDGLAMSI  180
GNGDAESAEG GSRLPQSMET EGSSDGSDGN TARGKKRSRE GTPTVGGDTK TETHCSPLLG  240
EVNPSTDKVL GAVVDPGMTK ALELRNPPSV NVAKTNPATI PQPGAMLPSE AWSPNDRELK  300
RERRKQSNRE SARRSRLRKQ AEAEELAHKV ETLTTVNMTL KSEIDQFTEK SQKLRLENAA  360
LTKLKNAQLG PTQEIILNNI DEQRSSNSGA KLHQLMDASP RADAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312318RRSRLRK
2312319RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.76250.0bud
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G094200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080944e-49AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037554.10.0PREDICTED: G-box-binding factor 3-like isoform X2
SwissprotQ990891e-119CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A3N7FZK40.0A0A3N7FZK4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s08990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-110G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]