PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G036600.1 | ||||||||
Common Name | POPTR_0014s03590g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 262aa MW: 27530.2 Da PI: 6.3803 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2.1e-37 | 27 | 86 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprC+st tkfCyynny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s Potri.014G036600.1 27 TEPLPCPRCNSTTTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDVPVGGGTRKNSKRS 86 67899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-24 | 28 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-32 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MPTEISQGHP TEAQNTMGAT HQPPKTTEPL PCPRCNSTTT KFCYYNNYNL SQPRHFCKSC 60 RRYWTQGGTL RDVPVGGGTR KNSKRSRSTS NNSSSISTSS SNSTSSNSAT LTAFTTTHEP 120 ESMPVVLSST TDSGLAAVKT EVPAGLNLND GLPSEDGNFI SLMNSNDQHG FTGLGGYGYA 180 SGFGFGPSEM GIGFGGRGSW SCPVMENVLV NGGTSGCHPW QLDCDHVEGG GLQAGFTADT 240 ENYFGSWPDL VMSAPAGKGL N* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.7967 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00189 | DAP | Transfer from AT1G47655 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G036600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375014.1 | 0.0 | dof zinc finger protein DOF1.6 | ||||
TrEMBL | B9MVJ0 | 0.0 | B9MVJ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 2e-37 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G036600.1 |
Entrez Gene | 18104957 |