PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G012200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 686aa    MW: 75942.4 Da    PI: 6.8368
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G012200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-16329388155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.014G012200.1 329 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 388
                         78*******************988886678446*************************98 PP
2AP245.22.4e-14433482355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.014G012200.1 433 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 482
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.46E-22329396No hitNo description
PfamPF008476.9E-13329388IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16329398IPR016177DNA-binding domain
SMARTSM003804.3E-29330402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16330397IPR001471AP2/ERF domain
PROSITE profilePS5103219.203330396IPR001471AP2/ERF domain
PRINTSPR003676.4E-6331342IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-17431490IPR016177DNA-binding domain
CDDcd000181.58E-24431489No hitNo description
SMARTSM003808.7E-33432496IPR001471AP2/ERF domain
PROSITE profilePS5103218.966432490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18432489IPR001471AP2/ERF domain
PfamPF008471.1E-9433482IPR001471AP2/ERF domain
PRINTSPR003676.4E-6472492IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKSMNNDDDN NNHNANWLGF SLSPQMKMEV PSGAGHHHQT QPPSAAIPTA IPTGFFHSQL  60
PQLNYGIYYG VDDQGENGGF YSPLPVLPLK SDGSLCMMDA LTRTQPQATM VTTSTPKLED  120
FFGGATMGTH HYESNDREAM ALSLDSSPSM YYHQDPDHEP NNQNCLNHLQ QNPRQQQHQH  180
IQVQHYPCYS NFRNNEMLVG EDAKQMAQAS DCSLKLPNMG DDGITGMKNW VSRNYQGNHA  240
MEQKMLRCMV ENGGESGPNI SAMAYGDLQC LSLSMSPGSQ SSCVTGSLQV SPSVNDSAAM  300
ETKKRGPGKV DQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK  360
GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY QNEIEEMKNM TRQEYVAHLR  420
RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF  480
RGVNAVTNFV ITRYDVERIM ASSTLLAGEL ARRNKDIGPC DDASTNHSIP STHNSNGESL  540
PSQNSENESD WKMVLYQSSQ QQLDHKASNV MDNYKTQAFL LSPENVIGID CMSSVHQHEF  600
EDSSKMGAHM SNASSLVTSL SSSREGSPDR ASLPMLFGMP PSAASKLFTS PNGDVNSWIP  660
SAAAAQLRPA VSLPHAPVFA AWTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.55530.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G012200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440363.10.0AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2K1XNS60.0A0A2K1XNS6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-135AP2 family protein