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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.012G100200.1 |
| Common Name | POPTR_0012s10190g |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 205aa MW: 23746.3 Da PI: 10.5354 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G100200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien ++rqvtfskRrng+lKKA+ELS+LCdaev++i+fs+tgk+y ++s
Potri.012G100200.1 9 KRIENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLIVFSPTGKFYQFAS 59
79***********************************************86 PP
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| 2 | K-box | 68.5 | 2.1e-23 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+++ e +++e++ L+k i++ + ++Rh +Ged+e L +keL+qLe+qL+ +++++RskK ++ e+++ l+ k++++qeen +L+k+l
Potri.012G100200.1 82 SHTRSLEFWRREIEELQKTINETEAKLRHCIGEDIEMLGMKELKQLERQLKAGVERVRSKKLRIAAEHVNWLKGKQRSIQEENACLKKRLH 172
5667789********************************************************************************9986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 32.324 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.06E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.93E-39 | 2 | 76 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.3E-21 | 82 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.14 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MGRGKVELKR IENPTRRQVT FSKRRNGLLK KAFELSILCD AEVSLIVFSP TGKFYQFASH 60
EMERTIARYR SEAGLSGPND HSHTRSLEFW RREIEELQKT INETEAKLRH CIGEDIEMLG 120
MKELKQLERQ LKAGVERVRS KKLRIAAEHV NWLKGKQRSI QEENACLKKR LHELHGGNIS 180
SRIWEPNARK AIQLRTIDDG SHLH*
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