PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G006800.1 | ||||||||
Common Name | POPTR_0010s00900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27405 Da PI: 9.4155 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.6e-20 | 97 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ ta+eAaka+++a+k+++g Potri.010G006800.1 97 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTADEAAKAYDEAAKRIRG 146 69*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.3E-32 | 97 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.472 | 97 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-38 | 97 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 97 | 155 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-14 | 97 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.07E-32 | 98 | 156 | No hit | No description |
PRINTS | PR00367 | 5.3E-11 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MCGGAIISDF VSVKRGRKPT TEDLWSELDS LSDFLGLDHR SMNNINNGSK KENLSNLKFA 60 QKPRQPNQVI TERVEKPSQA TEQEAGKKKV QRTRKNVYRG IRQRPWGKWA AEIRDPHKGV 120 RVWLGTYNTA DEAAKAYDEA AKRIRGDKAK LNFPPQPPPT SEAAPPPPPK SEAAPPPAKK 180 RCILGPETAA MASFEQILNL ESFHGLETKQ TAAQLSCDGG GSGDYNCDSV DPWMLDDLIN 240 ISLIISKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 98 | 154 | 6 | 63 | ATERF1 |
3gcc_A | 5e-22 | 98 | 154 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12147 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G006800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU282832 | 1e-117 | GU282832.1 Populus balsamifera isolate STO11 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282833 | 1e-117 | GU282833.1 Populus balsamifera isolate STO11 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282834 | 1e-117 | GU282834.1 Populus balsamifera isolate GAL12 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282835 | 1e-117 | GU282835.1 Populus balsamifera isolate GAL12 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282836 | 1e-117 | GU282836.1 Populus balsamifera isolate RNA13 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282837 | 1e-117 | GU282837.1 Populus balsamifera isolate RNA13 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282838 | 1e-117 | GU282838.1 Populus balsamifera isolate NWL07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282839 | 1e-117 | GU282839.1 Populus balsamifera isolate NWL07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282840 | 1e-117 | GU282840.1 Populus balsamifera isolate FRE01 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282841 | 1e-117 | GU282841.1 Populus balsamifera isolate FRE01 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282842 | 1e-117 | GU282842.1 Populus balsamifera isolate HAY07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282843 | 1e-117 | GU282843.1 Populus balsamifera isolate HAY07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282844 | 1e-117 | GU282844.1 Populus balsamifera isolate INU03 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282845 | 1e-117 | GU282845.1 Populus balsamifera isolate INU03 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282846 | 1e-117 | GU282846.1 Populus balsamifera isolate KUU07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282847 | 1e-117 | GU282847.1 Populus balsamifera isolate KUU07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282848 | 1e-117 | GU282848.1 Populus balsamifera isolate LOV02 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282849 | 1e-117 | GU282849.1 Populus balsamifera isolate LOV02 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282850 | 1e-117 | GU282850.1 Populus balsamifera isolate STL13 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence. | |||
GenBank | GU282851 | 1e-117 | GU282851.1 Populus balsamifera isolate STL13 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315490.2 | 0.0 | ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
Swissprot | P42736 | 5e-50 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2K1YM03 | 0.0 | A0A2K1YM03_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s00900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-38 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G006800.1 |
Entrez Gene | 7477223 |