 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.008G041500.1 |
Common Name | POPTR_0008s04110g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
M-type_MADS |
Protein Properties |
Length: 220aa MW: 24355.2 Da PI: 9.6031 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G041500.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 66.5 | 2.6e-21 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+i ks qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + +
Potri.008G041500.1 17 KIAKKSHLQVTFSKRRAGLFKKASELSTLCGVDIAMIVFSPAQKAFSF 64
68899999*********************************9997665 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MVNKKPTMGR QKIKIEKIAK KSHLQVTFSK RRAGLFKKAS ELSTLCGVDI AMIVFSPAQK 60 AFSFGHPSVD SMMHRFLTGS PPPPPPSSGL HQLIETRRDA NVHEQNMQLA QILNQLEAEK 120 KNGEVLDQMR KVNRSQCCWE APIEELELHE LEQLRGALEE LKKTVAKQVN NILIQSTSSL 180 PFLAVNGVGE VGNLGTKLEI DNASAALHFN NFAYAQKIC*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC215733 | 0.0 | AC215733.1 Populus trichocarpa clone POP051-I21, complete sequence. |