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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.007G029200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
GRAS |
Protein Properties |
Length: 607aa MW: 68133.8 Da PI: 7.1969 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.007G029200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 303.3 | 6e-93 | 237 | 605 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
++ L+++A+++++++l+laqa+L+rl+++ +sp g+p+qR+a++f+ AL++ la ++ + +p s++n +++++a+++f+ +sPi+
Potri.007G029200.1 237 IQELIKAADCFDTNELQLAQAILERLNHRlQSPIGKPLQRAAFFFKDALQSLLAT--GSTRPQTNPVIPSWSNIVQTIKAYEAFFRISPIP 325
689*************************99************************9..4444455666666778****************** PP
GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
f+ +t+NqaIl++++g+ +H+iDfdi+ G ++++L+++L +++++ +p lRiT+v + + e++ ++erL++fA+el++++
Potri.007G029200.1 326 MFADFTTNQAILDSLNGNsVFLHVIDFDIGFGCHYASLMRELVDKADScnnltSPLLRITAVITE--DTVIETKLIKERLSQFAHELKIRL 414
******************5667***********************955555669*********95..599999****************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
+++++ +++e+l+++++++ gE++aV l+ ++r l +s+++ +++++ v+++sP vv+vv++e ++ +++sF + f+++le+y
Potri.007G029200.1 415 HIEFVPFRTFEMLSFKAIEFVDGEKTAVILSPIIFRRL---GSTNN-VTTFVNDVRRVSPSVVIVVDSEgwTESgTGSSFRRNFVDCLEFY 501
****999******************************9...55555.667*******************554445677************* PP
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
s++fdsl+a + + ++++k+E +ll+++i +v g++ +++Wre + aG++pv+ls++a qa++ll kv+++g+ v ++
Potri.007G029200.1 502 SMMFDSLDAAAITGGDWARKIEIFLLKPKILAAVEGCGRR------VASRWREVFVGAGMRPVHLSQFADFQAESLLGKVQVRGFYVAKRL 586
*******99999999*******************999987......7899***************************************** PP
GRAS 356 gslvlgWkdrpLvsvSaWr 374
++lvl+WkdrpL+++SaW+
Potri.007G029200.1 587 AELVLCWKDRPLIATSAWK 605
******************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0030154 | Biological Process | cell differentiation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 607 aa
Download sequence Send
to blast |
MFACGTFTFC SKVLEFCKYK QRTPSSLAIS HFLKHSKQAE KKKIEGVSST EGLLTFVLLA 60 MKVPVPSPQN SSCNNQSQNP KPVSCNNTNN NSRNIRINPN NQNLCYEPTS VLDLRRSPSP 120 ARAGKPAPAN DPIEWDDHVL QTLDWDSIMR DLDFHDDSAP ALIKNFPQFG PCSESQIQSH 180 NLPEFTASHQ MDATQFLHSD FNDMYINSIP THNLTSLDLS HSFHNNIGNW NAGFDFIQEL 240 IKAADCFDTN ELQLAQAILE RLNHRLQSPI GKPLQRAAFF FKDALQSLLA TGSTRPQTNP 300 VIPSWSNIVQ TIKAYEAFFR ISPIPMFADF TTNQAILDSL NGNSVFLHVI DFDIGFGCHY 360 ASLMRELVDK ADSCNNLTSP LLRITAVITE DTVIETKLIK ERLSQFAHEL KIRLHIEFVP 420 FRTFEMLSFK AIEFVDGEKT AVILSPIIFR RLGSTNNVTT FVNDVRRVSP SVVIVVDSEG 480 WTESGTGSSF RRNFVDCLEF YSMMFDSLDA AAITGGDWAR KIEIFLLKPK ILAAVEGCGR 540 RVASRWREVF VGAGMRPVHL SQFADFQAES LLGKVQVRGF YVAKRLAELV LCWKDRPLIA 600 TSAWKC*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |