PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G226800.1
Common NamePOPTR_0006s24330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 389aa    MW: 43856.9 Da    PI: 4.694
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G226800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35441342101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye++ed+++++++sws   nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+
  Potri.006G226800.1  44 FLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSHKFSTTLLPKHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKH 125
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++ikrk+
  Potri.006G226800.1 126 LLKTIKRKR 134
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.28E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEGVVVKEEE TVTCTGGGAS SSSSSSSFSP HPMEGLNEVG PPPFLTKTYE MVEDPSTDTV  60
VSWSGGRNSF IVWDSHKFST TLLPKHFKHS NFSSFIRQLN TYGFRKVDPD RWEFANEGFL  120
GGQKHLLKTI KRKRHLSQTT QQQGGGACIE LGQFEFEGEL ERLKRDRNVL MAEIVRLRQQ  180
QQQSREHIAA MEDRLRSTER KQQRVMTFLA KALNNPSFIE QFAQRAAQRR EIRGVEIGRK  240
RRLTASPSVE NLQEVASVAL GSSQFVDYMN QDLPTIENEM ETLFSAVLDN ESSSDIKDPI  300
ASSMDTASGG STLDAVNETI WEELLTDDLV SGEPNEVVVS DEPEVDVEVE DLVAKPVDWS  360
DDFQDLVDQM GYLRPERQQR IFRRGVWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243513317129Heat shock factor protein 1
5d5v_B2e-243513317129Heat shock factor protein 1
5d5v_D2e-243513317129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G226800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139780.0KP013978.1 Populus simonii heat shock transcription factor A2 (HsfA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309492.20.0heat shock factor protein HSF30
SwissprotP411521e-142HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2I4KL080.0A0A2I4KL08_POPTR; HSF family protein
STRINGPOPTR_0006s24330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-123heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]