PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G077300.1
Common NamePOPTR_0005s07900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 373aa    MW: 41404.2 Da    PI: 6.424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G077300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.8e-21172222256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a+++a+ kl+ge
  Potri.005G077300.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTYDTAEEAALAYDNAAYKLRGE 222
                         59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-34171231No hitNo description
SuperFamilySSF541713.6E-23172230IPR016177DNA-binding domain
PROSITE profilePS5103223.261172229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-32172230IPR001471AP2/ERF domain
SMARTSM003809.9E-38172235IPR001471AP2/ERF domain
PfamPF008471.3E-14173222IPR001471AP2/ERF domain
PRINTSPR003678.0E-11173184IPR001471AP2/ERF domain
PRINTSPR003678.0E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAAAIDIYNT TVPVFSDPCR EELMKALEPF MKSASPSPTS TYSSPSPSTS SPPFSSHPSC  60
FYNNNSLISS YPNLDLSFCS PTSTQMFSNG FLDYNQMGFE QTGPIGLNHL TPSQILQIQA  120
KIHFQQQQQQ KMENLATTTS QFVHNQRASN FLAPKPVPMK QSAASPQKPT KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TYDTAEEAAL AYDNAAYKLR GEYARLNFPH LRHQGAHVSG  240
EFGDYKPLHS SVDAKLQAIC QSLGLQKQGK TREPSSVANS KKTATAPLQA KIEDDCSLRG  300
ELKTEYENFG VEDYKVEIPS PSPASSDESL AGSSSPESEI SFLDFSGSLQ WDEFENFGLE  360
KYPSVEIDWS SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21171229160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.100540.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G077300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5974990.0EF597499.1 Populus euphratica dehydrate responsive element-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307098.10.0ethylene-responsive transcription factor RAP2-4
TrEMBLB9H5440.0B9H544_POPTR; ERF family protein
STRINGPOPTR_0005s07900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-65related to AP2 4