PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 220aa MW: 24689.2 Da PI: 8.8244

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G187000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	59	110	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + ++Wv+e+r+p +k+ r++lg+f ++e+Aa+a++ a+++l+ge Potri.004G187000.1 59 PVYRGVRKRN-GNKWVCEVREP---NKKSRIWLGTFTSPEMAARAHDVAALALKGE 110 68***887.9**9998...347***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.7E-12	59	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-20	60	119	IPR016177	DNA-binding domain
SMART	SM00380	1.3E-26	60	123	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	60	119	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.377	60	117	IPR001471	AP2/ERF domain
CDD	cd00018	1.00E-28	61	119	No hit	No description
PRINTS	PR00367	2.5E-7	61	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-7	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEFENHSPSI SSLRQNLSCK PCNNPINYIY NLKQAQERPV TVLKKKKAGR KKFKETRHPV 60 YRGVRKRNGN KWVCEVREPN KKSRIWLGTF TSPEMAARAH DVAALALKGE TATLNFPDSA 120 LILPRAKSSS AGDIRRAARD AALNDDPFSM VMMSCPNNCS EKVSHQPNAL FFDEEALFNM 180 PGLLDSMAEG LILTPPVMQR GFNWDDMACS TDLTLWEED*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269\|PubMed:17136305}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G187000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF151459	0.0	EF151459.1 Populus trichocarpa C-repeat binding facor 5 (CBF5) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455149.1	2e-88	dehydration-responsive element-binding protein 1B
Swissprot	A2WZI4	2e-55	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	2e-55	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A9PL46	4e-87	A9PL46_POPTR; C-repeat binding facor 5
STRING	POPTR_0004s19820.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	3e-35	C-repeat/DRE binding factor 2

Link Out ? help Back to Top
Phytozome	Potri.004G187000.1
Entrez Gene	18097973

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]