PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G201600.1
Common NamePOPTR_0002s20270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 314aa    MW: 35103.1 Da    PI: 5.8797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G201600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1881129355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++ ++g
  Potri.002G201600.1  81 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARIIRG 129
                         9*******.**********954...4*******************99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.16980137IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2280138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-3280138IPR001471AP2/ERF domain
SMARTSM003801.0E-3780143IPR001471AP2/ERF domain
CDDcd000181.87E-3281138No hitNo description
PRINTSPR003678.2E-128192IPR001471AP2/ERF domain
PfamPF008471.2E-1181122IPR001471AP2/ERF domain
PRINTSPR003678.2E-12103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MCGGAILADI IPRNRGRREA ASQFWPNSCF DKLGPFESCL SQPSNQESFT LKRPQPQPQP  60
ASGDHEQMEK PNAKRQRKNL YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY  120
DREARIIRGK KAKVNFPNED EHYSSSQNSN TKPPMYQTPT CHFSKGYDFG YGSGMNQVEA  180
YSSNGFNGQP IVASGEDDSG SASEEGTRLV GCNQNVKSNI YMGQVKLEVE EKLEKVKNKE  240
VVVVDLGTGE EENEVQKLTE ELIAYENYMK FYQIPYLDGQ SMAPNGSTQE NLVANLWNFD  300
DVCVAPPVTS APL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2181137360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21811391574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.104550.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G201600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301490.20.0ethylene-responsive transcription factor ERF071
TrEMBLB9GSD40.0B9GSD4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-34ethylene-responsive element binding protein