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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G188700.4 | ||||||||
Common Name | POPTR_0002s18970g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 1003aa MW: 110901 Da PI: 6.2375 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.6 | 1.3e-41 | 150 | 227 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Potri.002G188700.4 150 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 227 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-33 | 146 | 212 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.308 | 148 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-39 | 149 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-30 | 151 | 224 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 4.1E-7 | 301 | 329 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-7 | 776 | 886 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.45E-7 | 779 | 886 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.1E-7 | 779 | 887 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1003 aa Download sequence Send to blast |
MEARFGGEPH HFYAMGPTDM RAVGKRGLEW DLNDWKWDGD LFIASPLNPV PSTSVSRPFF 60 PLGVGTGVPA TGNSSNSSSS CSDEVNLGVE KGKRELEKRR RVVVIDDDNL NDQETGGLSL 120 KLGGQRDVGN WEGSSGKKTK LVGGGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS 180 KALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDTV GNGSSMNDDQ 240 NSGYLLISLL RILSNMHSNR SDETTDQDLL THLLRSLASH SVEHGGRNMF GPLQEPRDLS 300 TSFGNSEVVS TLLSNGEGPS NLKQHLTVPV SGMPQQVMPV HDAYGANIQT TSSLKPSIPN 360 NFAVYSEVRE STAGQVKMNN FDLNDICVDS DDGTEDIERS PAPVNARTSS LDCPSWVQQD 420 SHQSSPPQTS RNSDSASAQS PSSSSGEAQS RTDRIVFKLF GKEPNDFPLV LRAQILDWLS 480 HSPTDIESYI RPGCIILTIY LHQAEAAWEE LCCGLGSSLS RLLAVSEDTF WRTGWIYIRV 540 QHQIAFVYNG QVVVDTSLPL TSNNYSKILS VKPIAITASE RAEFLIKGVN LSRPATRLLC 600 AVEGNYMVQE NRQEVMDGVD SFKGHDEVQC VNFSCSIPMV TGRGFIEIED HGFSSSFFPF 660 LVAEEDVCSE IRMLEGVLET ETDADFEETE KMEAKNQAMN FVHEMSWLLH RSQLKSRLGC 720 SDPSMNLFPL RRFKWLMEFS MDHEWCAVVG KLLNILHNGI VGTEEHSSLN VALSEMGLLH 780 RAVRRNSRSL VELLLRYVPE KFGSKDTALV GGSHESILFR PDVTGPAGLT PLHIAAGKDG 840 SEDVLDTLTE DPGMVGIEAW KNAVDSTGFT PEDYARLRGH YTYIHLVQRK INKRQAVGGH 900 VVLDIPSNLS NSNINEKQNE GLSSSFEIGQ TALRPTQGNC KLCSQKVVYG IASRSQLYRP 960 AMLSMVAIAA VCVCVALLFK SCPEVLYVFR PFRWEMLDYG TS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 150 | 224 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11723 | 0.0 | bud| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G188700.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450078.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | B9GSZ5 | 0.0 | B9GSZ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18970.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 | Representative plant | OGRP2595 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G188700.4 |
Entrez Gene | 7481436 |
Publications ? help Back to Top | |||
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