PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G188700.1
Common NamePOPTR_0002s18970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 975aa    MW: 108029 Da    PI: 6.1992
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G188700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41150227178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Potri.002G188700.1 150 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 227
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-33146212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.308148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-39149230IPR004333Transcription factor, SBP-box
PfamPF031104.5E-30151224IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.9E-6746857IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-7750858IPR020683Ankyrin repeat-containing domain
CDDcd002042.37E-7751858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MEARFGGEPH HFYAMGPTDM RAVGKRGLEW DLNDWKWDGD LFIASPLNPV PSTSVSRPFF  60
PLGVGTGVPA TGNSSNSSSS CSDEVNLGVE KGKRELEKRR RVVVIDDDNL NDQETGGLSL  120
KLGGQRDVGN WEGSSGKKTK LVGGGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS  180
KALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDTV GNGSSMNDDQ  240
NSGYLLISLL RILSNMHSNR SDETTDQDLL THLLRSLASH SVEHGGRNMF GPLQEPRDLS  300
TSFGNSEQVM PVHDAYGANI QTTSSLKPSI PNNFAVYSEV RESTAGQVKM NNFDLNDICV  360
DSDDGTEDIE RSPAPVNART SSLDCPSWVQ QDSHQSSPPQ TSRNSDSASA QSPSSSSGEA  420
QSRTDRIVFK LFGKEPNDFP LVLRAQILDW LSHSPTDIES YIRPGCIILT IYLHQAEAAW  480
EELCCGLGSS LSRLLAVSED TFWRTGWIYI RVQHQIAFVY NGQVVVDTSL PLTSNNYSKI  540
LSVKPIAITA SERAEFLIKG VNLSRPATRL LCAVEGNYMV QENRQEVMDG VDSFKGHDEV  600
QCVNFSCSIP MVTGRGFIEI EDHGFSSSFF PFLVAEEDVC SEIRMLEGVL ETETDADFEE  660
TEKMEAKNQA MNFVHEMSWL LHRSQLKSRL GCSDPSMNLF PLRRFKWLME FSMDHEWCAV  720
VGKLLNILHN GIVGTEEHSS LNVALSEMGL LHRAVRRNSR SLVELLLRYV PEKFGSKDTA  780
LVGGSHESIL FRPDVTGPAG LTPLHIAAGK DGSEDVLDTL TEDPGMVGIE AWKNAVDSTG  840
FTPEDYARLR GHYTYIHLVQ RKINKRQAVG GHVVLDIPSN LSNSNINEKQ NEGLSSSFEI  900
GQTALRPTQG NCKLCSQKVV YGIASRSQLY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV  960
FRPFRWEMLD YGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301502241084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.117230.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G188700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450080.10.0squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A2I4KKA40.0A0A2I4KKA4_POPTR; SBP family protein
STRINGPOPTR_0002s18970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]