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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G062000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18197.6 Da PI: 9.1195 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.3 | 2.7e-15 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+ r+vtfskRr+g++KKA+ L+ +a++a++ +s +g+l+++ Potri.002G062000.1 9 KKIQNEDYRKVTFSKRRAGLIKKAKFLCSGSNAQIAIVSYSLSGRLFTF 57 689*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.292 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-20 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-13 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-14 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-13 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-13 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MTRRKIEIKK IQNEDYRKVT FSKRRAGLIK KAKFLCSGSN AQIAIVSYSL SGRLFTFGHP 60 SVDSVVDPFL DNYTTDSCGS SSNESPHVST HGPSPPSRGV VDGKEGRPSW WALPVEDMDL 120 DMDGLRQYKA SLEILKSNVA SRLKEMEERA SLTRDFVGFL DAH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G062000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451981.1 | 1e-119 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2K2BEB9 | 1e-112 | A0A2K2BEB9_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23162 | 3 | 4 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-24 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G062000.1 |