PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 344aa MW: 38724.4 Da PI: 7.3673

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G212900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8e-07	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Phvul.011G212900.1 182 FPCPVCSKTFNRYNNLQMHM 201 89*****************9 PP
2	zf-C2H2	15.4	5.2e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F k + ++H +++ Phvul.011G212900.1 266 YMCRKCGKAFAVKGDWRTHEKNC 288 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.15E-6	178	204	No hit	No description
Pfam	PF13912	2.8E-5	182	201	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.9E-6	182	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.034	182	204	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.616	182	209	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.79E-7	250	286	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-6	262	286	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	40	266	286	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	266	286	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MTDPKSNLFH EWFNFMLLHP HYPSSSSSSQ SYPLPNYSNN RFGIQLQGES SSSSSSYSYS 60 YSYPPPPSSP PLREALPLIN KISLTGENDE ASPCVVEEKE EEKKHESGED GDQETVTVAL 120 HIGLPRMDTS SDLGSSRVSS TCREMGEKEE VNIVSEHPLE RLNKGQYWIP TPSQILIGPT 180 QFPCPVCSKT FNRYNNLQMH MWGHGSQYRK GPDSLKGTQP TAMLRLPCFC CAPGCKHNID 240 HPRARPLKDF RTLQTHYKRK HGIKPYMCRK CGKAFAVKGD WRTHEKNCGK IWYCLCGSDF 300 KHKRSLKDHV KAFGYGHGAF GIDCLQEEDE AASEIEHDGE NST*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MTDPKSNLFH EWFNFMLLHP HYPSSSSSSQ SYPLPNYSNN RFGIQLQGES SSSSSSYSYS  60
YSYPPPPSSP PLREALPLIN KISLTGENDE ASPCVVEEKE EEKKHESGED GDQETVTVAL  120
HIGLPRMDTS SDLGSSRVSS TCREMGEKEE VNIVSEHPLE RLNKGQYWIP TPSQILIGPT  180
QFPCPVCSKT FNRYNNLQMH MWGHGSQYRK GPDSLKGTQP TAMLRLPCFC CAPGCKHNID  240
HPRARPLKDF RTLQTHYKRK HGIKPYMCRK CGKAFAVKGD WRTHEKNCGK IWYCLCGSDF  300
KHKRSLKDHV KAFGYGHGAF GIDCLQEEDE AASEIEHDGE NST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G212900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007133835.1	0.0	hypothetical protein PHAVU_011G212900g
Swissprot	Q9SVY1	1e-122	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	V7AJX0	0.0	V7AJX0_PHAVU; Uncharacterized protein
STRING	XP_007133835.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-122	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.011G212900.1
Entrez Gene	18616904

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]