PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G108800.2
Common NamePHAVU_010G108800g, ROM2
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 425aa    MW: 45481.3 Da    PI: 6.7296
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G108800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.21.6e-22279341163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN +Lk+e+ +l++ ++++++e+
  Phvul.010G108800.2 279 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITQLTEGSEQMRMEN 341
                         89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.7E-32196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.1E-27130260No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-16273338No hitNo description
SMARTSM003383.3E-22279343IPR004827Basic-leucine zipper domain
PfamPF001703.0E-21279341IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-11282337No hitNo description
CDDcd147021.75E-19284332No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGNSEEGKSV KTGSPSSPAT TTNQTNQPNF HVYPDWAAMQ YYGPRVNIPP YFNSAVASGH  60
APHPYMWGPP QPMMPPYGPP YAAFYSPGGV YTHPAVAIGP HSHGQGVPSP PAAGTPSSVD  120
SPTKLSGNTD QGLMKKLKGF DGLAMSIGNC NAESAELGAE NRLSQSVDTE GSSDGSDGNT  180
AGANQTKMKR SREETSTTDG EGKTETQDGP VSKETTSSKM VMSATPASVA GKLVGPVISS  240
GMTTALELRK PLTVHSKENP TSAPQPCAAV PPEAWLQNER ELKRERRKQS NRESARRSRL  300
RKQAETEELA RKVEMLTAEN VSLKSEITQL TEGSEQMRME NSALREKLRN TQLGQREEII  360
LDSIDSKRST PVSTENLLSR VNNSSSNDRS AENESDFCEN KPNSGAKLHQ LLDTNPRADA  420
VAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G108800.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPVU418170.0U41817.1 Phaseolus vulgaris regulator of MAT2 (ROM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135193.10.0hypothetical protein PHAVU_010G108800g
SwissprotQ990891e-140CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLQ411090.0Q41109_PHAVU; Regulator of MAT2
STRINGXP_007135192.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-95G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Chern MS,Bobb AJ,Bustos MM
    The regulator of MAT2 (ROM2) protein binds to early maturation promoters and represses PvALF-activated transcription.
    Plant Cell, 1996. 8(2): p. 305-21
    [PMID:8742714]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]