PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G069300.1

Common Name

PHAVU_009G069300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

M-type_MADS

Protein Properties

Length: 272aa MW: 31002 Da PI: 7.8758

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G069300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.8	4.3e-26	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien++nrqvtfskRrng++KKA+ELSvLC+++va+i+fs++g+ Phvul.009G069300.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCGVDVALIMFSPSGR 53 68****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.7E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.217	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.25E-38	2	78	No hit	No description
SuperFamily	SSF55455	9.29E-30	2	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-23	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-26	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCG VDVALIMFSP SGRPSFFSGN 60 KSIEEILERY VNLQSGEHGS TFRSCLEVRR EIFTCKSQLK EMEERLRIFE GDPSEITTLR 120 EAEYREYVLR QTLKQVQLRK CVLEENNSEA SHSPQVHGAK SVDVNNFVTS ASKNPVDWFP 180 HGNPHARTLN FENVYDPAPT RDQQPHSIAG VLTPTSRLVY SANMHQNDEM NPRNSLDVGI 240 NNTILCPQFE QTTLMNSSSW EHLHPLGTYW C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-15	1	91	1	92	MEF2 CHIMERA
6byy_B	2e-15	1	91	1	92	MEF2 CHIMERA
6byy_C	2e-15	1	91	1	92	MEF2 CHIMERA
6byy_D	2e-15	1	91	1	92	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G069300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136729.1	0.0	hypothetical protein PHAVU_009G069300g
Swissprot	Q9LM46	3e-37	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	V7AVU2	0.0	V7AVU2_PHAVU; Uncharacterized protein
STRING	XP_007136729.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13665	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-30	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Phvul.009G069300.1
Entrez Gene	18619377

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]